wip

.idea/php.xml

@@ -1,5 +1,10 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
+  <component name="LaravelPint">
+    <laravel_pint_settings>
+      <LaravelPintConfiguration tool_path="$PROJECT_DIR$/laravel_app/vendor/bin/pint" />
+    </laravel_pint_settings>
+  </component>
   <component name="MessDetectorOptionsConfiguration">
     <option name="transferred" value="true" />
   </component>

build_mosaic.sh

@@ -1,30 +1,25 @@
 #!/bin/bash
 
-filename="report_dummie.docx"
 weeks_ago="0"
-report_date="2022-12-12"
 
-# Parse de command line argumenten
-while [ "$#" -gt 0 ]; do
-    case "$1" in
+# Parse command line arguments
+for arg in "$@"; do
+    case $arg in
         --weeks_ago=*)
-            weeks_ago="${1#*=}"
+            weeks_ago="${arg#*=}"
             ;;
         *)
-            echo "Onbekende optie: $1"
+            echo "Unknown option: $arg"
             exit 1
             ;;
     esac
-    shift
 done
 
-# Controleer of de vereiste argumenten zijn ingesteld
+# Check if required arguments are set
 if [ -z "$weeks_ago" ]; then
-    echo "Missende argumenten. Gebruik: build_mosiac.sh --weeks_ago=3"
+    echo "Missing arguments. Use: build_mosiac.sh --weeks_ago=3"
     exit 1
 fi
 
-
-echo "Weeks ago: $weeks_ago"
-cd /Users/mfolkerts/smartCane/r_app
-Rscript 2_CI_data_prep.R $weeks_ago
+cd ../r_app
+Rscript 2_CI_data_prep.R $weeks_ago

build_report.sh

@@ -1,51 +1,37 @@
 #!/bin/bash
 
-filename="report_dummie.docx"
-weeks_ago="0"
-report_date="2022-12-12"
-
-# Parse de command line argumenten
-while [ "$#" -gt 0 ]; do
-    case "$1" in
+# Parse command line arguments
+for arg in "$@"; do
+    case $arg in
         --filename=*)
-            filename="${1#*=}"
+            filename="${arg#*=}"
             ;;
         --weeks_ago=*)
-            weeks_ago="${1#*=}"
+            weeks_ago="${arg#*=}"
             ;;
         --report_date=*)
-            report_date="${1#*=}"
+            report_date="${arg#*=}"
             ;;
         *)
-            echo "Onbekende optie: $1"
+            echo "Unknown option: $arg"
             exit 1
             ;;
     esac
-    shift
 done
 
-# Controleer of de vereiste argumenten zijn ingesteld
-if [ -z "$filename" ] || [ -z "$weeks_ago" ] || [ -z $report_date ]; then
-    echo "Missende argumenten. Gebruik: build_reports.sh --filename=hello.txt --weeks_ago=3 --report_date=2020-01-01"
+# Check if required arguments are set
+if [ -z "$filename" ] || [ -z "$weeks_ago" ] || [ -z "$report_date" ]; then
+    echo "Missing arguments. Use: build_reports.sh --filename=hello.txt --weeks_ago=3 --report_date=2020-01-01"
     exit 1
 fi
 
-# Je script logica hier
+# Script logic here
 echo "Filename: $filename"
 echo "Weeks ago: $weeks_ago"
 echo "Report date: $report_date"
 
-#script_dir="$(dirname "$0")"
-#echo $script_dir;
-#/bin/ps aux | grep fontd
-#output_file="/Users/mfolkerts/smartCane/laravel_app/storage/app/chemba/$filename"
-
-#echo "Output file: $output_file"
 echo '\n'
 
 echo 'zx28tb' | /usr/bin/sudo -S launchctl load -w /System/Library/LaunchAgents/com.apple.fontd.useragent.plist
 cd /Users/mfolkerts/smartCane/r_app
-#Rscript -e "rmarkdown::render('/Users/mfolkerts/smartCane/r_app/CI_Report_dashboard_planet.Rmd', 'all')"
-#Rscript 1_harvest_data_EcoFarm_v2.R
-#Rscript 2_CI_data_prep.R $weeks_ago
-Rscript -e "rmarkdown::render('CI_report_dashboard_planet.Rmd', output_file='$filename', params=list(ref='$ref', report_date='$report_date'))"
+Rscript -e "rmarkdown::render('CI_report_dashboard_planet.Rmd', output_file='$filename', params=list(ref='$ref', report_date='$report_date'))"

laravel_app/app/Jobs/ProjectDownloadTiffJob.php

@@ -6,10 +6,8 @@
 use App\Models\ProjectDownload;
 use Illuminate\Bus\Batchable;
 use Illuminate\Bus\Queueable;
-use Illuminate\Contracts\Queue\ShouldBeUnique;
 use Illuminate\Contracts\Queue\ShouldQueue;
 use Illuminate\Foundation\Bus\Dispatchable;
-use Illuminate\Process\Exceptions\ProcessFailedException;
 use Illuminate\Queue\InteractsWithQueue;
 use Illuminate\Queue\SerializesModels;
 use Carbon\Carbon;
@@ -37,42 +35,32 @@ public function __construct(ProjectDownload $download, Carbon $date,)
      */
     public function handle(): void
     {
-        $projectFolder = base_path('../');
-
         $command = [
-            sprintf('%srunpython.sh', $projectFolder),
+            sprintf('%srunpython.sh', base_path('../')),
             sprintf('--date=%s', $this->date->format('Y-m-d')),
             sprintf('--days=%d', $this->days),
             sprintf('--project_dir=%s', $this->download->project->download_path),
         ];
 
-        // Convert commands array to a single string
-
         $process = new Process($command);
-        $process->setTimeout(3600); // stel een geschikte timeout in
-        $process->start();
+        $process->setTimeout(3600);
+        $process->run();
 
-        try {
-            $process->wait(function ($type, $buffer) use (&$myOutput) {
-                logger($buffer);
-            });
-        } catch (ProcessFailedException $exception) {
-            logger('error', $exception->getMessage());
+        if (!$process->isSuccessful()) {
+            logger('error', $process->getErrorOutput());
         }
 
-        $this->download->update([
-            'status' => 'completed',
-        ]);
+        $this->download->update(['status' => 'completed']);
     }
 
     public static function handleForDate(Project $project, Carbon $date)
     {
-        $filename = sprintf('%s.tif', $date->format('Y-m-d'));
+        $filename = $date->format('Y-m-d') . '.tif';
         if ($project->downloads()->where(['status' => 'completed', 'name' => $filename])->count() > 0) {
             return;
         }
 
-        $path = sprintf('%s/%s/%s', $project->download_path, 'merged_final_tif', $filename);
+        $path = $project->download_path . '/merged_final_tif/' . $filename;
         return new self(
             $project->downloads()->create([
                 'name'   => $filename,

laravel_app/app/Jobs/ProjectMosiacGeneratorJob.php

@@ -48,7 +48,7 @@ public function handle(): void
 
         $process = new Process($command);
         $process->setTimeout(120);
-        $currentPath = '/usr/gnu/bin:/usr/local/bin:/bin:/usr/bin/Users/mfolkerts/anaconda3/bin:/Library/Apple/usr/bin';
+        $currentPath = 'usr/bin:/usr/gnu/bin:/usr/local/bin:/bin:/usr/bin/Users/mfolkerts/anaconda3/bin:/Library/Apple/usr/bin';
 
         $process->setEnv(['PATH' => $currentPath.':/usr/local/Cellar/pandoc/3.1.8/bin/pandoc']);
 //        $process->setTimeout(36000); // stel een geschikte timeout in

r_app/2_CI_data_prep.R

@@ -82,8 +82,6 @@ message("starting ", file)
 #   names(CI) <- c("green","nir")
 message("raster loaded")
 
-
-
   CI <- CI[[2]]/CI[[1]]-1
 #   CI <- CI$nir/CI$green-1
 message("CI calculated")
@@ -100,7 +98,6 @@ message("CI calculated")
 
   # v_crop <- mask_raster(v, pivot_sf_q)
   return(CI)
-
 }
 
 # rasters_masked <- map(filtered_files, create_mask_and_crop, pivot_sf_q)