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This commit is contained in:
Martin Folkerts 2023-11-06 12:14:13 +01:00
parent dbc8a13600
commit 3fe61f8ab8
2 changed files with 3 additions and 3 deletions
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4
r_app/2_CI_data_prep.R
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@ -18,7 +18,7 @@ laravel_storage_dir <- here("laravel_app/storage/app")
planet_tif_folder <- here(laravel_storage_dir, "chemba/merged_tif")
data_dir <- here(laravel_storage_dir, "Data")
extracted_CI_dir <- here(data_dir, "extracted_CI")
extracted_CI_dir <- here(data_dir, "extracted_ci")
daily_CI_vals_dir <- here(extracted_CI_dir, "daily_vals")
cumulative_CI_vals_dir <- here(extracted_CI_dir, "cumulative_vals")
@ -37,7 +37,7 @@ dir.create(here(weekly_CI_mosaic))
dates <- date_list(0)
#load pivot geojson
pivot_sf_q <- st_read(here(geojson_dir, "pivot_20210625.geojson")) %>% dplyr::select(pivot, pivot_quadrant) %>% vect()
pivot_sf_q <- st_read(here("pivot_20210625.geojson")) %>% dplyr::select(pivot, pivot_quadrant) %>% vect()
#load and filter raster files
raster_files <- list.files(planet_tif_folder,full.names = T, pattern = ".tif") #use pattern = '.tif$' or something else if you have multiple files in this folder

2
r_app/CI_report_dashboard_planet.Rmd
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@ -37,7 +37,7 @@ library(CAST)
```{r directories, message=FALSE, warning=FALSE, include=FALSE}
laravel_storage_dir <- here("laravel_app/storage/app")
data_dir <- here(laravel_storage_dir, "Data")
extracted_CI_dir <- here(data_dir, "extracted_CI")
extracted_CI_dir <- here(data_dir, "extracted_ci")
daily_CI_vals_dir <- here(extracted_CI_dir, "daily_vals")
cumulative_CI_vals_dir <- here(extracted_CI_dir, "cumulative_vals")
harvest_dir <- here(data_dir, "HarvestData")