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This commit is contained in:
Martin Folkerts 2023-10-16 15:45:52 +02:00
parent df65cda20c
commit 568565bc76
4 changed files with 700 additions and 28 deletions
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28
python_app/requirements.txt Normal file
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@ -0,0 +1,28 @@
aenum==3.1.15
certifi==2023.7.22
charset-normalizer==3.3.0
click==8.1.7
dataclasses-json==0.6.1
GDAL==3.7.2
idna==3.4
marshmallow==3.20.1
mypy-extensions==1.0.0
numpy==1.26.1
oauthlib==3.2.2
packaging==23.2
Pillow==10.1.0
pyproj==3.6.1
python-dateutil==2.8.2
requests==2.31.0
requests-oauthlib==1.3.1
sentinelhub==3.9.1
shapely==2.0.2
six==1.16.0
tifffile==2023.9.26
tomli==2.0.1
tomli_w==1.0.0
tqdm==4.66.1
typing-inspect==0.9.0
typing_extensions==4.8.0
urllib3==2.0.6
utm==0.7.0

619
r_app/CI_Report_dashboard_planet.html Normal file
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16
r_app/CI_report_dashboard_planet.Rmd
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@ -2,7 +2,7 @@
# title: paste0("CI report week ", week, " - all pivots from ", last_tuesday, " to ", today) # title: paste0("CI report week ", week, " - all pivots from ", last_tuesday, " to ", today)
output: output:
word_document: word_document:
reference_docx: word-styles-reference-03.docx reference_docx: "/Users/mfolkerts/smartCane/word-styles-reference-03.docx"
# toc: true # toc: true
editor_options: editor_options:
chunk_output_type: console chunk_output_type: console
@ -40,13 +40,13 @@ s2_dir <- "C:/Users/timon/Resilience BV/4002 CMD App - General/4002 CMD Team/400
```{r week, message=FALSE, warning=FALSE, include=FALSE} ```{r week, message=FALSE, warning=FALSE, include=FALSE}
# week <- 5 # week <- 5
# today = "2023-02-02" today = "2023-10-05"
# week <- week(today) week <- week(today)
# today = "2022-08-18" #today = "2022-08-18"
#
today = as.character(Sys.Date()) #today = as.character(Sys.Date())
week = lubridate::week(Sys.time()) #week = lubridate::week(Sys.time())
# week = 26 ## week = 26
title_var <- paste0("CI dashboard week ", week, " - all pivots dashboard using 3x3 meter resolution") title_var <- paste0("CI dashboard week ", week, " - all pivots dashboard using 3x3 meter resolution")
``` ```

65
smartcane.sh
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@ -2,28 +2,53 @@
# Definieer de directories die aangemaakt moeten worden # Definieer de directories die aangemaakt moeten worden
#declare -a dirs=( declare -a dirs=(
#"laravel_app/storage/app/extracted_ci/cumulative_vals" "laravel_app/storage/app/extracted_ci/cumulative_vals"
#"laravel_app/storage/app/chemba/merged_tif" "laravel_app/storage/app/chemba/merged_tif"
#"laravel_app/storage/app/chemba/merged_virtual" "laravel_app/storage/app/chemba/merged_virtual"
#"laravel_app/storage/app/chemba/single_images" "laravel_app/storage/app/chemba/single_images"
#) )
# #
## Loop door de directories en maak ze aan als ze nog niet bestaan, ## Loop door de directories en maak ze aan als ze nog niet bestaan,
## of maak ze leeg als ze al bestaan ## of maak ze leeg als ze al bestaan
#for dir in "${dirs[@]}"; do for dir in "${dirs[@]}"; do
#if [ ! -d "$dir" ]; then if [ ! -d "$dir" ]; then
#mkdir -p "$dir" mkdir -p "$dir"
#chmod -R 775 "$dir" chmod -R 775 "$dir"
#echo "Directory $dir is aangemaakt en bijgewerkt." echo "Directory $dir is aangemaakt en bijgewerkt."
#else else
## Verwijder alle inhoud binnen de bestaande directory # Verwijder alle inhoud binnen de bestaande directory
#find "$dir" -mindepth 1 -delete find "$dir" -mindepth 1 -delete
#echo "Inhoud van directory $dir is verwijderd." echo "Inhoud van directory $dir is verwijderd."
#fi fi
#done done
## Runnen van Jupyter Notebook ## Runnen van Jupyter Notebook
#jupyter nbconvert --execute --to script --stdout python_app/Chemba_download.ipynb # Directory waar de virtuele omgeving zal worden aangemaakt
VENV_DIR="./python_app/myenv"
# Controleer of de virtuele omgeving al bestaat
if [ ! -d "$VENV_DIR" ]; then
echo "Virtuele omgeving bestaat niet. Aan het aanmaken..."
python3 -m venv "$VENV_DIR"
else
echo "Virtuele omgeving bestaat al."
fi
# Activeer de virtuele omgeving
source "$VENV_DIR/bin/activate"
# Installeer of update de benodigde pakketten
if [ -f "requirements.txt" ]; then
echo "Requirements aan het installeren of bijwerken..."
pip install --upgrade -r python_app/requirements.txt
else
echo "Geen requirements.txt bestand gevonden."
fi
# Hier kan je verdere stappen toevoegen, zoals het uitvoeren van je Python-script of Jupyter Notebook
jupyter nbconvert --execute --to script --stdout python_app/Chemba_download.ipynb
# Deactiveer de virtuele omgeving (optioneel)
deactivate
## Runnen van R scripts ## Runnen van R scripts
# Kopieer de excel file met harvesting data en maak directory aan indien nodig # Kopieer de excel file met harvesting data en maak directory aan indien nodig
#mkdir -p laravel_app/storage/app/harvesting_data #mkdir -p laravel_app/storage/app/harvesting_data
@ -34,5 +59,5 @@
# #
## Runnen van Rmd bestand ## Runnen van Rmd bestand
# -e betekent "evalueren" en -i specificeert de input file # -e betekent "evalueren" en -i specificeert de input file
Rscript -e "rmarkdown::render('r_app/CI_Report_dashboard_planet.Rmd', 'all')" #Rscript -e "rmarkdown::render('r_app/CI_Report_dashboard_planet.Rmd', 'all')"