diff --git a/IMPLEMENTATION_GUIDE.md b/IMPLEMENTATION_GUIDE.md new file mode 100644 index 0000000..3111208 --- /dev/null +++ b/IMPLEMENTATION_GUIDE.md @@ -0,0 +1,967 @@ +# SmartCane Code-Improvements Merge Guide (Complete) + +**Target Repo**: https://bitbucket.org/sobitnl/smartcane/src/master/ +**Source Branch**: `code-improvements` (Timon's experimental area) +**Status**: Ready for merge (all changes, including optional enhancements) + +--- + +## 📋 SCOPE: CORE + OPTIONAL FEATURES + +### 🔴 CORE (Required for merge) +- Database migration (client_type column) +- File path changes (merged_final_tif → field_tiles_CI) +- Laravel form/job/mailing updates +- Shell script wrappers (5 files) +- Python package files (2 files) + +### 🟡 OPTIONAL (Post-merge enhancements) +- Country-based project organization (MZ/UG/TZ folders) +- Download scheduling (staggered 00:01 per-project) +- Project search feature +- Harvest prediction setup docs + +--- + +## 🚀 FULL IMPLEMENTATION CHECKLIST + +``` +═══════════════════════════════════════════════════════════════ +PHASE 1: CORE MERGE (Required) +═══════════════════════════════════════════════════════════════ + +[1.1] Database Migration (10 min) + ✓ Create: database/migrations/YYYY_MM_DD_add_client_type_to_projects_table.php + ✓ Run: php artisan migrate + +[1.2] Laravel Model Changes (20 min) + ✓ Edit: laravel_app/app/Models/Project.php + - Add 'client_type' to $fillable + - Update getMergedTiffList() — path change + - Update startDownload() — path change + - Update getTifsAsZip() — path change + - Add getLatestKpiFile() method + +[1.3] Laravel Job Changes (15 min) + ✓ Edit: laravel_app/app/Jobs/ProjectDownloadTiffJob.php + - Change path in handleForDate() + ✓ Edit: laravel_app/app/Jobs/ProjectMosiacGeneratorJob.php + - Replace command array + - Improve error handling + +[1.4] Laravel Forms (15 min) + ✓ Edit: laravel_app/app/Livewire/Projects/ProjectManager.php + - Add client_type to form + ✓ Edit: Project form Blade template + - Add + + + + + @error('formData.client_type') + {{ $message }} + @enderror + +``` + +--- + +### STEP 7: Edit `laravel_app/app/Livewire/Forms/MailingForm.php` + +**In `saveAndSendMailing()` static method:** + +```php +public static function saveAndSendMailing($report, $subject, $message, $recipients) { + if ($report->documentExists()) { + $mailing = $report->project->mailings()->create([ + 'subject' => $subject, + 'message' => $message, + 'report_id' => $report->id, + ]); + + // Attach main report + $mailing->attachments()->create([ + 'name' => $report->name, + 'path' => $report->path, + ]); + + // Auto-attach KPI Excel for cane_supply projects + if ($report->project->client_type === 'cane_supply') { + $kpiFile = $report->project->getLatestKpiFile(); + if ($kpiFile) { + $mailing->attachments()->create([ + 'name' => 'KPI Summary', + 'path' => $kpiFile, + ]); + } + } + + $mailing->recipients()->createMany($recipients); + Mail::to($mailing->recipients()->pluck('email')->toArray()) + ->send(new \App\Mail\ReportMailer($mailing, $report)); + } else { + self::sendReportNotFoundNotificationToAdmin($report); + } +} +``` + +--- + +### STEP 8: CREATE 5 Shell Script Wrappers + +**File: `10_create_per_field_tiffs.sh`** + +```bash +#!/bin/bash +# Wrapper for R script 10: Create per-field TIFFs +# Usage: ./10_create_per_field_tiffs.sh --project=angata + +set -e + +PROJECT="" + +while [[ $# -gt 0 ]]; do + case $1 in + --project=*) PROJECT="${1#*=}" ;; + --*) ;; # Ignore other args + esac + shift +done + +[ -z "$PROJECT" ] && { echo "ERROR: --project required"; exit 1; } + +cd "$(dirname "$0")/r_app" +Rscript -e "PROJECT='$PROJECT'; source('parameters_project.R'); source('10_create_per_field_tiffs.R')" +``` + +**File: `21_convert_ci_rds_to_csv.sh`** + +```bash +#!/bin/bash +# Wrapper for R script 21: Convert CI RDS to CSV +# Usage: ./21_convert_ci_rds_to_csv.sh --project=angata + +set -e + +PROJECT="" + +while [[ $# -gt 0 ]]; do + case $1 in + --project=*) PROJECT="${1#*=}" ;; + --*) ;; + esac + shift +done + +[ -z "$PROJECT" ] && { echo "ERROR: --project required"; exit 1; } + +cd "$(dirname "$0")/r_app" +Rscript -e "PROJECT='$PROJECT'; source('parameters_project.R'); source('21_convert_ci_rds_to_csv.R')" +``` + +**File: `22_harvest_baseline_prediction.sh`** + +```bash +#!/bin/bash +# Wrapper for Python script 22: Harvest baseline prediction +# Usage: ./22_harvest_baseline_prediction.sh --project=angata + +set -e + +PROJECT="" + +while [[ $# -gt 0 ]]; do + case $1 in + --project=*) PROJECT="${1#*=}" ;; + --*) ;; + esac + shift +done + +[ -z "$PROJECT" ] && { echo "ERROR: --project required"; exit 1; } + +cd "$(dirname "$0")/python_app" + +if command -v conda &> /dev/null; then + conda run -n pytorch_gpu python 22_harvest_baseline_prediction.py "$PROJECT" 2>&1 || \ + conda run -n pytorch_cpu python 22_harvest_baseline_prediction.py "$PROJECT" 2>&1 +else + python 22_harvest_baseline_prediction.py "$PROJECT" +fi +``` + +**File: `23_convert_harvest_format.sh`** + +```bash +#!/bin/bash +# Wrapper for Python script 23: Convert harvest format +# Usage: ./23_convert_harvest_format.sh --project=angata + +set -e + +PROJECT="" + +while [[ $# -gt 0 ]]; do + case $1 in + --project=*) PROJECT="${1#*=}" ;; + --*) ;; + esac + shift +done + +[ -z "$PROJECT" ] && { echo "ERROR: --project required"; exit 1; } + +cd "$(dirname "$0")/python_app" + +if command -v conda &> /dev/null; then + conda run -n pytorch_gpu python 23_convert_harvest_format.py "$PROJECT" 2>&1 || \ + conda run -n pytorch_cpu python 23_convert_harvest_format.py "$PROJECT" 2>&1 +else + python 23_convert_harvest_format.py "$PROJECT" +fi +``` + +**File: `31_harvest_imminent_weekly.sh`** + +```bash +#!/bin/bash +# Wrapper for Python script 31: Harvest imminent weekly +# Usage: ./31_harvest_imminent_weekly.sh --project=angata + +set -e + +PROJECT="" + +while [[ $# -gt 0 ]]; do + case $1 in + --project=*) PROJECT="${1#*=}" ;; + --*) ;; + esac + shift +done + +[ -z "$PROJECT" ] && { echo "ERROR: --project required"; exit 1; } + +cd "$(dirname "$0")/python_app" + +if command -v conda &> /dev/null; then + conda run -n pytorch_gpu python 31_harvest_imminent_weekly.py "$PROJECT" 2>&1 || \ + conda run -n pytorch_cpu python 31_harvest_imminent_weekly.py "$PROJECT" 2>&1 +else + python 31_harvest_imminent_weekly.py "$PROJECT" +fi +``` + +--- + +### STEP 9: CREATE 2 Python Package Files + +**File: `python_app/requirements_harvest.txt`** + +``` +torch>=2.0.0 +pandas>=1.5.0 +numpy>=1.23.0 +scikit-learn>=1.3.0 +GDAL>=3.7.0 +sentinelhub>=3.9.0 +shapely>=2.0.0 +pyproj>=3.4.0 +``` + +**File: `python_app/environment_pytorch.yml`** + +```yaml +name: pytorch_gpu +channels: + - pytorch + - nvidia + - conda-forge +dependencies: + - python=3.10 + - pytorch::pytorch + - pytorch::torchvision + - pytorch::torchaudio + - pytorch::pytorch-cuda=11.8 + - gdal>=3.7.0 + - pip + - pip: + - sentinelhub>=3.9.0 + - shapely>=2.0.0 + - pyproj>=3.4.0 +``` + +--- + +### STEP 10: CORE TESTING CHECKLIST + +```bash +# 1. Migration +php artisan migrate +# ✅ Expected: No errors, client_type column added + +# 2. Download test +# Go to Laravel UI → Create project with client_type=agronomic_support +# → Download Manager → Add image → Download +# Expected: File in laravel_app/storage/app/{project}/field_tiles_CI/ + +# 3. Mosaic test +# Go to Mosaic Manager → Create mosaic +# Check logs: grep "Unknown option" laravel.log +# Expected: No --data_dir errors, mosaic created + +# 4. Mail test +# Create project with client_type=cane_supply +# Generate & send report +# Expected: Email has 2 attachments (report + KPI Excel) + +# 5. Shell wrapper test +./10_create_per_field_tiffs.sh --project=angata +# Expected: R script executes without error +``` + +✅ **CORE MERGE COMPLETE** + +--- + +## 🟡 PHASE 2: ENHANCEMENTS (Post-Merge) + +### OPTIONAL 1: Country-Based Organization + +**Why**: Organize projects by geographic location (MZ/UG/TZ folders) + +**Create Migration**: `database/migrations/YYYY_MM_DD_add_country_to_projects_table.php` + +```php +string('country')->default('Mozambique')->after('name'); + $table->string('country_code', 2)->default('MZ')->after('country'); + }); + + // Update existing projects + DB::table('projects')->where('name', 'angata')->update(['country' => 'Mozambique', 'country_code' => 'MZ']); + DB::table('projects')->where('name', 'aura')->update(['country' => 'Mozambique', 'country_code' => 'MZ']); + DB::table('projects')->where('name', 'chemba')->update(['country' => 'Mozambique', 'country_code' => 'MZ']); + DB::table('projects')->where('name', 'xinavane')->update(['country' => 'Tanzania', 'country_code' => 'TZ']); + DB::table('projects')->where('name', 'esa')->update(['country' => 'Kenya', 'country_code' => 'KQ']); + DB::table('projects')->where('name', 'simba')->update(['country' => 'Uganda', 'country_code' => 'UG']); + DB::table('projects')->where('name', 'john')->update(['country' => 'Uganda', 'country_code' => 'UG']); + DB::table('projects')->where('name', 'huss')->update(['country' => 'Tanzania', 'country_code' => 'TZ']); + } + + public function down(): void + { + Schema::table('projects', function (Blueprint $table) { + $table->dropColumn(['country', 'country_code']); + }); + } +}; +``` + +**Update Project.php `$fillable`:** + +```php +protected $fillable = [ + 'name', + 'country', + 'country_code', + 'download_path', + 'client_type', + // ... rest +]; +``` + +**Update ProjectManager.php:** + +```php +public array $countries = [ + 'MZ' => 'Mozambique', + 'TZ' => 'Tanzania', + 'UG' => 'Uganda', + 'KQ' => 'Kenya', + 'SA' => 'South Africa', + 'ZW' => 'Zimbabwe', + 'BR' => 'Brazil', + 'MX' => 'Mexico', + 'IN' => 'India', +]; + +public function createProject() +{ + $projectIdentifier = $this->formData['id'] ?? null; + Validator::make( + ['name' => $this->formData['name']], + ['name' => ['required', Rule::unique('projects')->ignore($projectIdentifier)]] + )->validate(); + + $projectPath = $this->formData['country_code'] . '/' . $this->formData['name']; + Storage::makeDirectory($projectPath, recursive: true); + + $project = Project::create([ + 'name' => $this->formData['name'], + 'country' => $this->formData['country'], + 'country_code' => $this->formData['country_code'], + 'download_path' => $projectPath, + 'client_type' => $this->formData['client_type'] ?? 'agronomic_support', + ]); + return redirect()->route('project.show', [$project->name, 'settings']); +} +``` + +**Add to Blade template:** + +```blade +
+ + +
+ +
+ + +
+``` + +--- + +### OPTIONAL 2: Download Scheduling + +**Why**: Avoid API rate limits by staggering downloads per project at 00:01 + +#### Option A: Linux Cron (If server is Linux) + +**Add to `/etc/cron.d/smartcane_downloads`:** + +```bash +# Stagger downloads by 10 minutes per project +1 0 * * * /usr/bin/python /home/user/smartcane/python_app/00_download_8band_pu_optimized.py angata 2>&1 | logger +15 0 * * * /usr/bin/python /home/user/smartcane/python_app/00_download_8band_pu_optimized.py chemba 2>&1 | logger +25 0 * * * /usr/bin/python /home/user/smartcane/python_app/00_download_8band_pu_optimized.py xinavane 2>&1 | logger +35 0 * * * /usr/bin/python /home/user/smartcane/python_app/00_download_8band_pu_optimized.py esa 2>&1 | logger +45 0 * * * /usr/bin/python /home/user/smartcane/python_app/00_download_8band_pu_optimized.py simba 2>&1 | logger +0 1 * * * /usr/bin/python /home/user/smartcane/python_app/00_download_8band_pu_optimized.py aura 2>&1 | logger +``` + +#### Option B: Windows Task Scheduler (If server is Windows) + +```powershell +# Create task for each project +$taskName = "SmartCane-Download-angata" +$action = New-ScheduledTaskAction -Execute "powershell.exe" -Argument "-NoProfile -WindowStyle Hidden -Command python C:\smartcane\python_app\00_download_8band_pu_optimized.py angata" +$trigger = New-ScheduledTaskTrigger -Daily -At 00:01 +Register-ScheduledTask -TaskName $taskName -Action $action -Trigger $trigger -RunLevel Highest +``` + +#### Option C: Laravel Task Scheduler + +**Add to `laravel_app/app/Console/Kernel.php`:** + +```php +protected function schedule(Schedule $schedule) +{ + $schedule->exec('python python_app/00_download_8band_pu_optimized.py angata') + ->dailyAt('00:01'); + $schedule->exec('python python_app/00_download_8band_pu_optimized.py chemba') + ->dailyAt('00:15'); + $schedule->exec('python python_app/00_download_8band_pu_optimized.py xinavane') + ->dailyAt('00:25'); + $schedule->exec('python python_app/00_download_8band_pu_optimized.py esa') + ->dailyAt('00:35'); + $schedule->exec('python python_app/00_download_8band_pu_optimized.py simba') + ->dailyAt('00:45'); + $schedule->exec('python python_app/00_download_8band_pu_optimized.py aura') + ->dailyAt('01:00'); +} +``` + +--- + +### OPTIONAL 3: Project Search Feature + +**Why**: Find projects quickly if there are many + +**Add to `laravel_app/app/Livewire/Projects/ProjectList.php`:** + +```php +public string $searchQuery = ''; + +public function getProjectsProperty() +{ + $query = Project::query(); + + if (!empty($this->searchQuery)) { + $query->where('name', 'like', '%' . $this->searchQuery . '%') + ->orWhere('download_path', 'like', '%' . $this->searchQuery . '%'); + } + + return $query->orderBy('name')->paginate(15); +} +``` + +**Add to Blade template:** + +```blade + + +
+ @forelse($this->projects as $project) +
+

{{ $project->name }}

+

{{ $project->download_path }}

+ {{ $project->client_type }} +
+ @empty +

No projects found

+ @endforelse +
+ +{{ $this->projects->links() }} +``` + +--- + +### OPTIONAL 4: Harvest Date Prediction Setup + +**Why**: Enable harvest Date forecasting for cane_supply projects + +**Create conda environment:** + +```bash +conda env create -f python_app/environment_pytorch.yml + +# Activate +conda activate pytorch_gpu + +# Or CPU-only if no GPU +conda create -n pytorch_cpu python=3.10 pytorch::pytorch torchvision torchaudio -c pytorch +conda activate pytorch_cpu +``` + +**Run baseline prediction (once):** + +```bash +python python_app/22_harvest_baseline_prediction.py angata +python python_app/23_convert_harvest_format.py angata +``` + +**Schedule weekly prediction:** + +```bash +# Add to cron (Linux) +0 23 * * 0 conda run -n pytorch_gpu python /home/user/smartcane/python_app/31_harvest_imminent_weekly.py angata 2>&1 | logger + +# Or Task Scheduler (Windows) +# Similar to download scheduling above, but Sunday 23:00 +``` + +--- + +## 📊 Summary: What Gets Changed + +| Category | Files Modified | Changes Required | +|----------|---|---| +| Database | migrations/ | 1 file: add client_type column | +| Models | Project.php | 5 edits: fillable, 3 methods, 1 new method | +| Jobs | 2 files | ProjectDownloadTiffJob (1 line), ProjectMosiacGeneratorJob (full array) | +| Forms | 3 files | ProjectManager.php, Blade template, MailingForm.php | +| Scripts | 5 files created | Shell wrappers (R/Python) | +| Python | 2 files created | requirements_harvest.txt, environment_pytorch.yml | + +**TOTAL**: 6 files created + 6 files modified + 1 template modified = **13 changes** + +--- + +## ✅ FINAL VERIFICATION + +After ALL changes (core + optionals), test: + +```bash +# 1. Migration worked +php artisan migrate + +# 2. Download saves to correct path +# → Download image → check laravel_app/storage/app/{project}/field_tiles_CI/ + +# 3. Mosaic runs without errors +# → Create mosaic → check logs for no --data_dir errors + +# 4. Mail has 2 attachments for cane_supply +# → Send report for cane_supply project → verify report + KPI Excel + +# 5. Shell wrappers work +./10_create_per_field_tiffs.sh --project=angata +# → Should execute R script successfully + +# 6. Search works (if implemented) +# → Search for project by name on Projects page + +# 7. Country filter works (if implemented) +# → Filter projects by country code +``` + +--- + +## 🌍 POST-MERGE: Data Recreation Strategy + +After merge is live, existing projects need new directory structure. + +### Option A: Delete & Redownload (Small projects) +**Projects**: aura, chemba, xinavane, esa, simba + +``` +1. Backup project folder (optional) +2. Delete project from Laravel UI +3. Recreate with new client_type selector +4. Redownload 2-3 years of data (~50-150 GB per project) +5. Run pipeline normally +``` + +### Option B: Preserve merged_tif (Large projects) +**Projects**: angata + +``` +1. Backup merged_tif/ folder externally +2. Delete all other folders in project +3. Keep only: merged_tif/ +4. Run Scripts 10-80 on existing data + → Regenerates field_tiles_CI/, reports/, etc. +5. No need to redownload +``` + +--- + +## 🔴 CORE vs OPTIONAL Quick List + +**MUST DO** (for merge): +- ✅ Database migration +- ✅ Project.php edits (4 path changes + 1 new method) +- ✅ Job edits (ProjectDownloadTiffJob, ProjectMosiacGeneratorJob) +- ✅ Form edits (ProjectManager, MailingForm, Blade template) +- ✅ 5 shell wrappers +- ✅ 2 Python files + +**NICE-TO-HAVE** (post-merge): +- 🟡 Country organization (adds ~45 min) +- 🟡 Download scheduling (adds ~30 min) +- 🟡 Project search (adds ~30 min) +- 🟡 Harvest prediction setup (adds ~20 min) + +--- + +**Ready to implement everything?** All code is copy-paste ready above. + diff --git a/install.packages b/install.packages deleted file mode 100644 index 8b24b96..0000000 --- a/install.packages +++ /dev/null @@ -1,2 +0,0 @@ -install.packages(c("googledrive", "here", "tidyverse", "lubridate", "readxl", "googlesheets4", "here", "sf", "tidyverse", "lubridate", "terra", "exactextractr") -install.packages("packages/CIprep_0.1.4.tar.gz",repos=NULL, type="source") diff --git a/laravel_app/app/Livewire/Forms/MailingForm.php b/laravel_app/app/Livewire/Forms/MailingForm.php index 6d5d0d8..8925b17 100644 --- a/laravel_app/app/Livewire/Forms/MailingForm.php +++ b/laravel_app/app/Livewire/Forms/MailingForm.php @@ -48,11 +48,23 @@ public static function saveAndSendMailing($report, $subject, $message, $recipien 'report_id' => $report->id, ]); + // Attach main report $mailing->attachments()->create([ 'name' => $report->name, 'path' => $report->path, ]); + // For cane_supply projects, also attach latest KPI Excel file + if ($report->project->client_type === 'cane_supply') { + $kpiFile = $report->project->getLatestKpiFile(); + if ($kpiFile) { + $mailing->attachments()->create([ + 'name' => 'KPI Data - ' . basename($kpiFile), + 'path' => $kpiFile, + ]); + } + } + $mailing->recipients()->createMany($recipients); Mail::to($mailing->recipients()->pluck('email')->toArray()) ->send(new \App\Mail\ReportMailer($mailing, $report)); diff --git a/laravel_app/resources/views/livewire/projects/tabs/settings.blade.php b/laravel_app/resources/views/livewire/projects/tabs/settings.blade.php index 095957a..9e9eff1 100644 --- a/laravel_app/resources/views/livewire/projects/tabs/settings.blade.php +++ b/laravel_app/resources/views/livewire/projects/tabs/settings.blade.php @@ -251,6 +251,19 @@ class="w-5 h-5 text-red-400 dark:text-red-200"> class="relative w-11 h-6 bg-gray-200 peer-focus:outline-none peer-focus:ring-4 peer-focus:ring-indigo-300 dark:peer-focus:ring-indigo-800 rounded-full peer dark:bg-gray-700 peer-checked:after:translate-x-full rtl:peer-checked:after:-translate-x-full peer-checked:after:border-white after:content-[''] after:absolute after:top-[2px] after:start-[2px] after:bg-white after:border-gray-300 after:border after:rounded-full after:h-5 after:w-5 after:transition-all dark:border-gray-600 peer-checked:bg-indigo-600"> +
+ + + @if($this->formData['id'] ?? false) +

{{ __('Client type cannot be changed after project creation') }}

+ @endif + +
diff --git a/package_manager.log b/package_manager.log deleted file mode 100644 index 64f5048..0000000 --- a/package_manager.log +++ /dev/null @@ -1,111 +0,0 @@ -[INFO] 2025-06-24 14:49:29 - SmartCane Project - Package Manager Started -[INFO] 2025-06-24 14:49:29 - Working directory: C:/Users/timon/Resilience BV/4020 SCane ESA DEMO - Documenten/General/4020 SCDEMO Team/4020 TechnicalData/WP3/smartcane -[INFO] 2025-06-24 14:49:29 - Checking renv initialization... -[INFO] 2025-06-24 14:49:29 - ✓ renv already initialized -[INFO] 2025-06-24 14:49:29 - ✓ renv already active -[INFO] 2025-06-24 14:49:29 - -=== INITIAL STATE === -[INFO] 2025-06-24 14:49:29 - === PACKAGE REPORT === -[INFO] 2025-06-24 14:49:29 - dplyr | Required: >= 1.1.4 | Installed: 1.1.4 | ✅ OK -[INFO] 2025-06-24 14:49:29 - here | Required: >= 1.0.1 | Installed: 1.0.1 | ✅ OK -[INFO] 2025-06-24 14:49:29 - lubridate | Required: >= 1.9.4 | Installed: 1.9.4 | ✅ OK -[INFO] 2025-06-24 14:49:29 - readr | Required: >= 2.1.5 | Installed: 2.1.5 | ✅ OK -[INFO] 2025-06-24 14:49:29 - readxl | Required: >= 1.4.5 | Installed: 1.4.5 | ✅ OK -[INFO] 2025-06-24 14:49:29 - stringr | Required: >= 1.5.1 | Installed: 1.5.1 | ✅ OK -[INFO] 2025-06-24 14:49:29 - tidyr | Required: >= 1.3.1 | Installed: 1.3.1 | ✅ OK -[INFO] 2025-06-24 14:49:29 - purrr | Required: >= 1.0.2 | Installed: 1.0.2 | ✅ OK -[INFO] 2025-06-24 14:49:29 - magrittr | Required: >= 2.0.0 | Installed: 2.0.3 | ✅ OK -[INFO] 2025-06-24 14:49:29 - exactextractr | Required: >= 0.10.0 | Installed: 0.10.0 | ✅ OK -[INFO] 2025-06-24 14:49:29 - raster | Required: >= 3.6.32 | Installed: 3.6.32 | ✅ OK -[INFO] 2025-06-24 14:49:29 - sf | Required: >= 1.0.19 | Installed: 1.0.19 | ✅ OK -[INFO] 2025-06-24 14:49:29 - terra | Required: >= 1.8.43 | Installed: 1.8.43 | ✅ OK -[INFO] 2025-06-24 14:49:29 - ggplot2 | Required: >= 3.5.1 | Installed: 3.5.1 | ✅ OK -[INFO] 2025-06-24 14:49:29 - tmap | Required: >= 4.0 | Installed: 4.0 | ✅ OK -[INFO] 2025-06-24 14:49:29 - gridExtra | Required: >= 2.3 | Installed: 2.3 | ✅ OK -[INFO] 2025-06-24 14:49:29 - knitr | Required: >= 1.50 | Installed: 1.50 | ✅ OK -[INFO] 2025-06-24 14:49:29 - rmarkdown | Required: >= 2.21.0 | Installed: 2.29 | ✅ OK -[INFO] 2025-06-24 14:49:29 - tidyverse | Required: >= 2.0.0 | Installed: 2.0.0 | ✅ OK -[INFO] 2025-06-24 14:49:29 - caret | Required: >= 7.0.1 | Installed: 7.0.1 | ✅ OK -[INFO] 2025-06-24 14:49:29 - CAST | Required: >= 1.0.3 | Installed: 1.0.3 | ✅ OK -[INFO] 2025-06-24 14:49:29 - randomForest | Required: >= 4.7.1.2 | Installed: 4.7.1.2 | ✅ OK -[INFO] 2025-06-24 14:49:29 - rsample | Required: >= 1.3.0 | Installed: 1.3.0 | ✅ OK -[INFO] 2025-06-24 14:49:29 - furrr | Required: >= 0.3.1 | Installed: 0.3.1 | ✅ OK -[INFO] 2025-06-24 14:49:29 - future | Required: >= 1.40.0 | Installed: 1.40.0 | ✅ OK -[INFO] 2025-06-24 14:49:29 - progressr | Required: >= 0.15.1 | Installed: 0.15.1 | ✅ OK -[INFO] 2025-06-24 14:49:29 - reshape2 | Required: >= 1.4.4 | Installed: 1.4.4 | ✅ OK -[INFO] 2025-06-24 14:49:29 - zoo | Required: >= 1.8.13 | Installed: 1.8.13 | ✅ OK -[INFO] 2025-06-24 14:49:29 - === END PACKAGE REPORT === -[INFO] 2025-06-24 14:49:29 - -=== PACKAGE INSTALLATION/UPDATES === -[INFO] 2025-06-24 14:49:29 - === PACKAGE MANAGEMENT STARTED === -[INFO] 2025-06-24 14:49:29 - R version: R version 4.4.2 (2024-10-31 ucrt) -[INFO] 2025-06-24 14:49:29 - ✓ dplyr version 1.1.4 meets requirement (>= 1.1.4) -[INFO] 2025-06-24 14:49:29 - ✓ here version 1.0.1 meets requirement (>= 1.0.1) -[INFO] 2025-06-24 14:49:29 - ✓ lubridate version 1.9.4 meets requirement (>= 1.9.4) -[INFO] 2025-06-24 14:49:29 - ✓ readr version 2.1.5 meets requirement (>= 2.1.5) -[INFO] 2025-06-24 14:49:29 - ✓ readxl version 1.4.5 meets requirement (>= 1.4.5) -[INFO] 2025-06-24 14:49:29 - ✓ stringr version 1.5.1 meets requirement (>= 1.5.1) -[INFO] 2025-06-24 14:49:29 - ✓ tidyr version 1.3.1 meets requirement (>= 1.3.1) -[INFO] 2025-06-24 14:49:29 - ✓ purrr version 1.0.2 meets requirement (>= 1.0.2) -[INFO] 2025-06-24 14:49:29 - ✓ magrittr version 2.0.3 meets requirement (>= 2.0.0) -[INFO] 2025-06-24 14:49:29 - ✓ exactextractr version 0.10.0 meets requirement (>= 0.10.0) -[INFO] 2025-06-24 14:49:29 - ✓ raster version 3.6.32 meets requirement (>= 3.6.32) -[INFO] 2025-06-24 14:49:29 - ✓ sf version 1.0.19 meets requirement (>= 1.0.19) -[INFO] 2025-06-24 14:49:29 - ✓ terra version 1.8.43 meets requirement (>= 1.8.43) -[INFO] 2025-06-24 14:49:29 - ✓ ggplot2 version 3.5.1 meets requirement (>= 3.5.1) -[INFO] 2025-06-24 14:49:29 - ✓ tmap version 4.0 meets requirement (>= 4.0) -[INFO] 2025-06-24 14:49:29 - ✓ gridExtra version 2.3 meets requirement (>= 2.3) -[INFO] 2025-06-24 14:49:29 - ✓ knitr version 1.50 meets requirement (>= 1.50) -[INFO] 2025-06-24 14:49:29 - ✓ rmarkdown version 2.29 meets requirement (>= 2.21.0) -[INFO] 2025-06-24 14:49:29 - ✓ tidyverse version 2.0.0 meets requirement (>= 2.0.0) -[INFO] 2025-06-24 14:49:29 - ✓ caret version 7.0.1 meets requirement (>= 7.0.1) -[INFO] 2025-06-24 14:49:29 - ✓ CAST version 1.0.3 meets requirement (>= 1.0.3) -[INFO] 2025-06-24 14:49:29 - ✓ randomForest version 4.7.1.2 meets requirement (>= 4.7.1.2) -[INFO] 2025-06-24 14:49:29 - ✓ rsample version 1.3.0 meets requirement (>= 1.3.0) -[INFO] 2025-06-24 14:49:29 - ✓ furrr version 0.3.1 meets requirement (>= 0.3.1) -[INFO] 2025-06-24 14:49:29 - ✓ future version 1.40.0 meets requirement (>= 1.40.0) -[INFO] 2025-06-24 14:49:29 - ✓ progressr version 0.15.1 meets requirement (>= 0.15.1) -[INFO] 2025-06-24 14:49:29 - ✓ reshape2 version 1.4.4 meets requirement (>= 1.4.4) -[INFO] 2025-06-24 14:49:29 - ✓ zoo version 1.8.13 meets requirement (>= 1.8.13) -[INFO] 2025-06-24 14:49:29 - Package management complete: 28 success, 0 failures -[INFO] 2025-06-24 14:49:29 - Updating renv lockfile... -[ERROR] 2025-06-24 14:49:33 - ✗ Failed to update lockfile: aborting snapshot due to pre-flight validation failure -[INFO] 2025-06-24 14:49:33 - -=== FINAL STATE === -[INFO] 2025-06-24 14:49:33 - === PACKAGE REPORT === -[INFO] 2025-06-24 14:49:33 - dplyr | Required: >= 1.1.4 | Installed: 1.1.4 | ✅ OK -[INFO] 2025-06-24 14:49:33 - here | Required: >= 1.0.1 | Installed: 1.0.1 | ✅ OK -[INFO] 2025-06-24 14:49:33 - lubridate | Required: >= 1.9.4 | Installed: 1.9.4 | ✅ OK -[INFO] 2025-06-24 14:49:33 - readr | Required: >= 2.1.5 | Installed: 2.1.5 | ✅ OK -[INFO] 2025-06-24 14:49:33 - readxl | Required: >= 1.4.5 | Installed: 1.4.5 | ✅ OK -[INFO] 2025-06-24 14:49:33 - stringr | Required: >= 1.5.1 | Installed: 1.5.1 | ✅ OK -[INFO] 2025-06-24 14:49:33 - tidyr | Required: >= 1.3.1 | Installed: 1.3.1 | ✅ OK -[INFO] 2025-06-24 14:49:33 - purrr | Required: >= 1.0.2 | Installed: 1.0.2 | ✅ OK -[INFO] 2025-06-24 14:49:33 - magrittr | Required: >= 2.0.0 | Installed: 2.0.3 | ✅ OK -[INFO] 2025-06-24 14:49:33 - exactextractr | Required: >= 0.10.0 | Installed: 0.10.0 | ✅ OK -[INFO] 2025-06-24 14:49:33 - raster | Required: >= 3.6.32 | Installed: 3.6.32 | ✅ OK -[INFO] 2025-06-24 14:49:33 - sf | Required: >= 1.0.19 | Installed: 1.0.19 | ✅ OK -[INFO] 2025-06-24 14:49:33 - terra | Required: >= 1.8.43 | Installed: 1.8.43 | ✅ OK -[INFO] 2025-06-24 14:49:33 - ggplot2 | Required: >= 3.5.1 | Installed: 3.5.1 | ✅ OK -[INFO] 2025-06-24 14:49:33 - tmap | Required: >= 4.0 | Installed: 4.0 | ✅ OK -[INFO] 2025-06-24 14:49:33 - gridExtra | Required: >= 2.3 | Installed: 2.3 | ✅ OK -[INFO] 2025-06-24 14:49:33 - knitr | Required: >= 1.50 | Installed: 1.50 | ✅ OK -[INFO] 2025-06-24 14:49:33 - rmarkdown | Required: >= 2.21.0 | Installed: 2.29 | ✅ OK -[INFO] 2025-06-24 14:49:33 - tidyverse | Required: >= 2.0.0 | Installed: 2.0.0 | ✅ OK -[INFO] 2025-06-24 14:49:33 - caret | Required: >= 7.0.1 | Installed: 7.0.1 | ✅ OK -[INFO] 2025-06-24 14:49:33 - CAST | Required: >= 1.0.3 | Installed: 1.0.3 | ✅ OK -[INFO] 2025-06-24 14:49:33 - randomForest | Required: >= 4.7.1.2 | Installed: 4.7.1.2 | ✅ OK -[INFO] 2025-06-24 14:49:33 - rsample | Required: >= 1.3.0 | Installed: 1.3.0 | ✅ OK -[INFO] 2025-06-24 14:49:33 - furrr | Required: >= 0.3.1 | Installed: 0.3.1 | ✅ OK -[INFO] 2025-06-24 14:49:33 - future | Required: >= 1.40.0 | Installed: 1.40.0 | ✅ OK -[INFO] 2025-06-24 14:49:33 - progressr | Required: >= 0.15.1 | Installed: 0.15.1 | ✅ OK -[INFO] 2025-06-24 14:49:33 - reshape2 | Required: >= 1.4.4 | Installed: 1.4.4 | ✅ OK -[INFO] 2025-06-24 14:49:33 - zoo | Required: >= 1.8.13 | Installed: 1.8.13 | ✅ OK -[INFO] 2025-06-24 14:49:33 - === END PACKAGE REPORT === -[INFO] 2025-06-24 14:49:33 - Package management completed in 7.72 seconds -[INFO] 2025-06-24 14:49:33 - Log saved to: C:/Users/timon/Resilience BV/4020 SCane ESA DEMO - Documenten/General/4020 SCDEMO Team/4020 TechnicalData/WP3/smartcane/package_manager.log -[SUCCESS] 2025-06-24 14:49:33 - 🎉 All packages successfully managed! -[INFO] 2025-06-24 14:49:33 - 📋 Next steps: -[INFO] 2025-06-24 14:49:33 - 1. Test your R scripts to ensure everything works -[INFO] 2025-06-24 14:49:33 - 2. Commit renv.lock to version control -[INFO] 2025-06-24 14:49:33 - 3. Share this script with your team