diff --git a/python_app/planet_download.ipynb b/python_app/planet_download.ipynb
index 9256cdf..7457816 100644
--- a/python_app/planet_download.ipynb
+++ b/python_app/planet_download.ipynb
@@ -12,7 +12,7 @@
},
{
"cell_type": "code",
- "execution_count": 93,
+ "execution_count": 1,
"id": "b7ca7102-5fd9-481f-90cd-3ba60e288649",
"metadata": {},
"outputs": [],
@@ -29,9 +29,10 @@
"from osgeo import gdal\n",
"\n",
"from sentinelhub import MimeType, CRS, BBox, SentinelHubRequest, SentinelHubDownloadClient, \\\n",
- " DataCollection, bbox_to_dimensions, DownloadRequest, SHConfig, BBoxSplitter, read_data, Geometry\n",
+ " DataCollection, bbox_to_dimensions, DownloadRequest, SHConfig, BBoxSplitter, read_data, Geometry, SentinelHubCatalog\n",
"\n",
"config = SHConfig()\n",
+ "catalog = SentinelHubCatalog(config=config)\n",
"\n",
"import time\n",
"import shutil\n",
@@ -42,7 +43,7 @@
},
{
"cell_type": "code",
- "execution_count": 94,
+ "execution_count": 2,
"id": "330c967c-2742-4a7a-9a61-28bfdaf8eeca",
"metadata": {},
"outputs": [],
@@ -52,7 +53,7 @@
},
{
"cell_type": "code",
- "execution_count": 95,
+ "execution_count": 3,
"id": "49f8496a-a267-4b74-9500-a168e031ed68",
"metadata": {},
"outputs": [],
@@ -63,7 +64,7 @@
},
{
"cell_type": "code",
- "execution_count": 96,
+ "execution_count": 4,
"id": "5491a840-779c-4f0c-8164-c3de738b3298",
"metadata": {},
"outputs": [],
@@ -74,7 +75,7 @@
},
{
"cell_type": "code",
- "execution_count": 97,
+ "execution_count": 5,
"id": "eb1fb662-0e25-4ca9-8317-c6953290842b",
"metadata": {},
"outputs": [],
@@ -99,7 +100,7 @@
},
{
"cell_type": "code",
- "execution_count": 98,
+ "execution_count": 6,
"id": "060396e0-e5ee-4b54-b211-5d8bfcba167f",
"metadata": {},
"outputs": [],
@@ -111,18 +112,18 @@
},
{
"cell_type": "code",
- "execution_count": 100,
+ "execution_count": 7,
"id": "c9f79e81-dff8-4109-8d26-6c423142dcf2",
"metadata": {},
"outputs": [],
"source": [
"# Adjust the number of days needed\n",
- "days = 20 #change back to 28 which is the default. 3 years is 1095 days."
+ "days = 2 #change back to 28 which is the default. 3 years is 1095 days."
]
},
{
"cell_type": "code",
- "execution_count": 101,
+ "execution_count": 8,
"id": "e18bdf8f-be4b-44ab-baaa-de5de60d92cb",
"metadata": {},
"outputs": [],
@@ -144,7 +145,7 @@
},
{
"cell_type": "code",
- "execution_count": 102,
+ "execution_count": 9,
"id": "3f7c8e04-4569-457b-b39d-283582c4ba36",
"metadata": {},
"outputs": [],
@@ -168,7 +169,7 @@
},
{
"cell_type": "code",
- "execution_count": 103,
+ "execution_count": 10,
"id": "244b5752-4f02-4347-9278-f6a0a46b88f4",
"metadata": {},
"outputs": [],
@@ -264,7 +265,7 @@
},
{
"cell_type": "code",
- "execution_count": 104,
+ "execution_count": 11,
"id": "848dc773-70d6-4ae6-b05c-d6ebfb41624d",
"metadata": {},
"outputs": [
@@ -275,18 +276,14 @@
"Monthly time windows:\n",
"\n",
"2024-10-13\n",
- "2024-10-14\n",
- "2024-10-15\n",
- "...\n",
- "2024-10-30\n",
- "2024-10-31\n",
- "2024-11-01\n"
+ "2024-10-14\n"
]
}
],
"source": [
"days_needed = int(os.environ.get(\"DAYS\", days))\n",
"date_str = os.environ.get(\"DATE\")\n",
+ "\n",
"if date_str:\n",
" # Parse de datumstring naar een datetime.date object\n",
" end = datetime.datetime.strptime(date_str, \"%Y-%m-%d\").date()\n",
@@ -321,7 +318,7 @@
},
{
"cell_type": "code",
- "execution_count": 105,
+ "execution_count": 12,
"id": "c803e373-2567-4233-af7d-0d2d6f7d4f8e",
"metadata": {},
"outputs": [],
@@ -331,7 +328,7 @@
},
{
"cell_type": "code",
- "execution_count": 106,
+ "execution_count": 13,
"id": "dc24d54e-2272-4f30-bcf5-4d8fc381915c",
"metadata": {},
"outputs": [],
@@ -341,7 +338,7 @@
},
{
"cell_type": "code",
- "execution_count": 107,
+ "execution_count": 14,
"id": "cd071b42-d0cd-4e54-8f88-ad1a339748e3",
"metadata": {},
"outputs": [],
@@ -351,7 +348,7 @@
},
{
"cell_type": "code",
- "execution_count": 108,
+ "execution_count": 15,
"id": "301d12e4-e47a-4034-aec0-aa5673e64935",
"metadata": {},
"outputs": [
@@ -379,20 +376,20 @@
},
{
"cell_type": "code",
- "execution_count": 109,
+ "execution_count": 16,
"id": "431f6856-8d7e-4868-b627-20deeb47d77e",
"metadata": {},
"outputs": [
{
"data": {
"image/svg+xml": [
- ""
+ ""
],
"text/plain": [
- ""
+ ""
]
},
- "execution_count": 109,
+ "execution_count": 16,
"metadata": {},
"output_type": "execute_result"
}
@@ -405,7 +402,7 @@
},
{
"cell_type": "code",
- "execution_count": 110,
+ "execution_count": 17,
"id": "18655785",
"metadata": {},
"outputs": [],
@@ -426,7 +423,7 @@
},
{
"cell_type": "code",
- "execution_count": 111,
+ "execution_count": 18,
"id": "a6fc418f",
"metadata": {},
"outputs": [],
@@ -438,7 +435,7 @@
},
{
"cell_type": "code",
- "execution_count": 112,
+ "execution_count": 19,
"id": "ebc416be",
"metadata": {},
"outputs": [
@@ -446,10 +443,10 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "['2024-10-13', '2024-10-15', '2024-10-17', '2024-10-18', '2024-10-19', '2024-10-20', '2024-10-21', '2024-10-22', '2024-10-23', '2024-10-24', '2024-10-25', '2024-10-26', '2024-10-27', '2024-10-28', '2024-10-29']\n",
- "Total slots: 20\n",
- "Available slots: 15\n",
- "Excluded slots due to clouds: 5\n"
+ "['2024-10-13']\n",
+ "Total slots: 2\n",
+ "Available slots: 1\n",
+ "Excluded slots due to clouds: 1\n"
]
}
],
@@ -462,7 +459,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 20,
"id": "b0cabe8f-e1f2-4b18-8ac0-c2565d0ff16b",
"metadata": {},
"outputs": [],
@@ -543,7 +540,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 21,
"id": "8f2c3e20-894c-4fe5-95d3-482ee3bac117",
"metadata": {},
"outputs": [],
@@ -556,17 +553,72 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 22,
"id": "41b7369c-f768-44ba-983e-eb8eae4f3afd",
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " Image downloaded for 2024-10-13 and bbox 34.893901568473275,-17.347991154602312,34.902244620706924,-17.34035402194366\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "/usr/local/anaconda3/lib/python3.11/site-packages/sentinelhub/geometry.py:136: SHDeprecationWarning: Initializing `BBox` objects from `BBox` objects will no longer be possible in future versions.\n",
+ " return BBox._tuple_from_bbox(bbox)\n",
+ "/var/folders/qt/jcd_lqsd6nq6_5902w6403_h0000gn/T/ipykernel_37871/170088608.py:67: SHDeprecationWarning: The string representation of `BBox` will change to match its `repr` representation.\n",
+ " print(f' Image downloaded for ' +slot + ' and bbox ' + str(bbox))\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " Image downloaded for 2024-10-13 and bbox 34.88396660293689,-17.329532375657408,34.90142638883001,-17.32760743759949\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "/usr/local/anaconda3/lib/python3.11/site-packages/sentinelhub/geometry.py:136: SHDeprecationWarning: Initializing `BBox` objects from `BBox` objects will no longer be possible in future versions.\n",
+ " return BBox._tuple_from_bbox(bbox)\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " Image downloaded for 2024-10-13 and bbox 34.88382012875465,-17.32760743759949,34.90326541097948,-17.315648863263682\n",
+ " Image downloaded for 2024-10-13 and bbox 34.883117060422094,-17.315648863263682,34.9023997776829,-17.30369028892787\n",
+ " Image downloaded for 2024-10-13 and bbox 34.883228421674296,-17.30369028892787,34.90087977072043,-17.29173171459206\n",
+ " Image downloaded for 2024-10-13 and bbox 34.905630133532,-17.344205996328164,34.92341376153686,-17.3395660119353\n",
+ " Image downloaded for 2024-10-13 and bbox 34.905710855573936,-17.3395660119353,34.92341376153686,-17.32760743759949\n",
+ " Image downloaded for 2024-10-13 and bbox 34.90326541097948,-17.32760743759949,34.9146041448172,-17.316916692391352\n",
+ " Image downloaded for 2024-10-13 and bbox 34.92341376153686,-17.35152458627111,34.93795515789262,-17.3395660119353\n",
+ " Image downloaded for 2024-10-13 and bbox 34.92341376153686,-17.3395660119353,34.930609068174576,-17.334652123669677\n",
+ " Image downloaded for 2024-10-13 and bbox 34.95572747068288,-17.346631434137443,34.96371046265162,-17.3395660119353\n",
+ " Image downloaded for 2024-10-13 and bbox 34.95078266733916,-17.3395660119353,34.96371046265162,-17.32760743759949\n",
+ " Image downloaded for 2024-10-13 and bbox 34.947001852567226,-17.32760743759949,34.96371046265162,-17.315648863263682\n",
+ " Image downloaded for 2024-10-13 and bbox 34.95178751078458,-17.315648863263682,34.96371046265162,-17.311133447223234\n",
+ " Image downloaded for 2024-10-13 and bbox 34.96371046265162,-17.34987611658989,34.983858813209004,-17.3395660119353\n",
+ " Image downloaded for 2024-10-13 and bbox 34.96371046265162,-17.3395660119353,34.982903717937305,-17.32760743759949\n",
+ " Image downloaded for 2024-10-13 and bbox 34.96371046265162,-17.32760743759949,34.977469765322226,-17.322351372243453\n",
+ " Image downloaded for 2024-10-13 and bbox 34.96371046265162,-17.315106596091614,34.96405511470557,-17.312526972941786\n"
+ ]
+ }
+ ],
"source": [
"# Load areas outside the loop if they remain constant\n",
"#bbox_area = json.dumps(chosen_area)\n",
"#areas = json.loads(os.getenv('BBOX', bbox_area))\n",
"resolution = 3\n",
"\n",
- "for slot in slots:\n",
+ "for slot in available_slots:\n",
" for bbox in bbox_list:\n",
" bbox = BBox(bbox=bbox, crs=CRS.WGS84)\n",
" size = bbox_to_dimensions(bbox, resolution=resolution)\n",
@@ -575,7 +627,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 23,
"id": "7c0f8f0e-b1bc-4b5a-939d-e4358a485c06",
"metadata": {},
"outputs": [],
@@ -593,7 +645,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 24,
"id": "16c449ab-eb40-4ed9-9a26-6a64dae114e1",
"metadata": {},
"outputs": [],
@@ -606,7 +658,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 25,
"id": "6c02d7de-cddf-4fc3-8d23-8431415d07b8",
"metadata": {},
"outputs": [],
@@ -625,7 +677,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 26,
"id": "f62d8af8-1c5c-4a83-b888-7205bbe191af",
"metadata": {},
"outputs": [],
@@ -635,14 +687,121 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 27,
"id": "68db3c15-6f94-432e-b315-c329e4251b21",
"metadata": {
"tags": []
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/82e0bec78647a7e631bf46c7826a095a/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/f3a481c8a831f1096ad4a2924f7744ae/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/0f2fabfb5a98064d90a0efbab3c88137/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/b0517c30996ba1b4084987a606399db0/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/881f7ee0060d76182bd363cc0241c6b4/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/e2e16ebfcf17c0e954d5251fb42c3551/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/e651ed7a8ba7ce8ab6af12a272dc3fae/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/a5171cb8730a5d1eb6575afe3106d133/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/a9d5d3d8699ef77dc450496a196e7242/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/27e0e42c71a971cf4454256bc4978d91/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/4c86b96edcea1fb8aa4b3bc3f8d496da/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/eda0b30e16fdea0302acb62086f71169/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/7b17b7ffe207fded6a7f217d1b3a9a27/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/dc258ae8b2bae1a4c8cff9afd2a5f0a1/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/61b7ddaaa809eae197a1b595532146d2/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/cc7adecb78b95df872685b587dd0efc2/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/d73a9e0204c5149a819798778dfc9392/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/4babd2b91a1516c7c99da04d99ad4a19/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/82e0bec78647a7e631bf46c7826a095a/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/f3a481c8a831f1096ad4a2924f7744ae/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/0f2fabfb5a98064d90a0efbab3c88137/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/b0517c30996ba1b4084987a606399db0/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/881f7ee0060d76182bd363cc0241c6b4/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/e2e16ebfcf17c0e954d5251fb42c3551/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/e651ed7a8ba7ce8ab6af12a272dc3fae/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/a5171cb8730a5d1eb6575afe3106d133/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/a9d5d3d8699ef77dc450496a196e7242/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/27e0e42c71a971cf4454256bc4978d91/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/4c86b96edcea1fb8aa4b3bc3f8d496da/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/eda0b30e16fdea0302acb62086f71169/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/7b17b7ffe207fded6a7f217d1b3a9a27/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/dc258ae8b2bae1a4c8cff9afd2a5f0a1/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/61b7ddaaa809eae197a1b595532146d2/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/cc7adecb78b95df872685b587dd0efc2/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/d73a9e0204c5149a819798778dfc9392/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/4babd2b91a1516c7c99da04d99ad4a19/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/82e0bec78647a7e631bf46c7826a095a/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/f3a481c8a831f1096ad4a2924f7744ae/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/0f2fabfb5a98064d90a0efbab3c88137/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/b0517c30996ba1b4084987a606399db0/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/881f7ee0060d76182bd363cc0241c6b4/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/e2e16ebfcf17c0e954d5251fb42c3551/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/e651ed7a8ba7ce8ab6af12a272dc3fae/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/a5171cb8730a5d1eb6575afe3106d133/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/a9d5d3d8699ef77dc450496a196e7242/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/27e0e42c71a971cf4454256bc4978d91/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/d73a9e0204c5149a819798778dfc9392/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/61b7ddaaa809eae197a1b595532146d2/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/4c86b96edcea1fb8aa4b3bc3f8d496da/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/7b17b7ffe207fded6a7f217d1b3a9a27/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/4babd2b91a1516c7c99da04d99ad4a19/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/eda0b30e16fdea0302acb62086f71169/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/dc258ae8b2bae1a4c8cff9afd2a5f0a1/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: ../laravel_app/storage/app/chemba/single_images/2024-10-13/cc7adecb78b95df872685b587dd0efc2/response.tiff: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n",
+ "Warning 1: TIFFReadDirectory:Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.\n"
+ ]
+ }
+ ],
"source": [
- "for slot in slots:\n",
+ "for slot in available_slots:\n",
" merge_files(slot)"
]
},
@@ -658,12 +817,20 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 28,
"id": "cb3fa856-a550-4899-844a-e69209bba3ad",
"metadata": {
"tags": []
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Skipping empty_folders function.\n"
+ ]
+ }
+ ],
"source": [
"# List of folder names\n",
"\n",
@@ -699,7 +866,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "base",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -713,9 +880,9 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.12.3"
+ "version": "3.11.4"
}
},
"nbformat": 4,
"nbformat_minor": 5
-}
\ No newline at end of file
+}
diff --git a/r_app/Rplots.pdf b/r_app/Rplots.pdf
index a70ea84..f098abe 100644
Binary files a/r_app/Rplots.pdf and b/r_app/Rplots.pdf differ
diff --git a/runpython.sh b/runpython.sh
index c03d2ab..0183740 100755
--- a/runpython.sh
+++ b/runpython.sh
@@ -2,7 +2,7 @@
date=$(date +%Y-%m-%d)
# Standaardwaarde voor days
days=1
-project_dir="chemba_1"
+project_dir="chemba"
# Loop door alle argumenten
for arg in "$@"; do