minor visualistion chagnes

r_app/CI_report_dashboard_planet.Rmd

@@ -357,7 +357,8 @@ CI values typically range from 0 (bare soil or severely stressed vegetation) to
 
 Use these insights to identify areas that may need irrigation, fertilization, or other interventions, and to track the effectiveness of your management practices over time.
 
-\pagebreak
+\newpage
+
 # RGB Satellite Image - Current Week (if available)
 ```{r render_rgb_map, echo=FALSE, fig.height=7, fig.width=10, message=FALSE, warning=FALSE}
 # Check if RGB bands are available and create RGB map
@@ -440,6 +441,7 @@ tryCatch({
 ```
 
 \newpage
+
 # Chlorophyll Index (CI) Overview Map - Current Week
 ```{r render_ci_overview_map, echo=FALSE, fig.height=7, fig.width=10, message=FALSE, warning=FALSE}
 # Create overview chlorophyll index map
@@ -468,7 +470,6 @@ tryCatch({  # Base shape
 ```
 
 \newpage
-\pagebreak
 
 # Weekly Chlorophyll Index Difference Map
 ```{r render_ci_difference_map, echo=FALSE, fig.height=7, fig.width=10, message=FALSE, warning=FALSE}
@@ -498,9 +499,8 @@ tryCatch({  # Base shape
 ```
 
 \newpage
-\pagebreak
 
-```{r generate_field_visualizations, eval=TRUE, fig.height=4.5, fig.width=12, message=FALSE,echo=FALSE, warning=FALSE, include=TRUE, results='asis'}
+```{r generate_field_visualizations, eval=TRUE, fig.height=3.8, fig.width=10, message=FALSE,echo=FALSE, warning=FALSE, include=TRUE, results='asis'}
 # Generate detailed visualizations for each field
 tryCatch({
   # Merge field polygons for processing
@@ -509,18 +509,24 @@ tryCatch({
     dplyr::summarise(.groups = 'drop')
   
   # Generate plots for each field
-  purrr::walk(AllPivots_merged$field, function(field_name) {
+  for(i in seq_along(AllPivots_merged$field[1:3])) {
+    field_name <- AllPivots_merged$field[i]
+    
     tryCatch({
-      cat("\n")  # Add an empty line for better spacing
+      # Add page break before each field (except the first one)
+      if(i > 1) {
+        cat("\\newpage\n\n")
+      }
       
-      # Call ci_plot with explicit parameters
+      # Call ci_plot with explicit parameters (ci_plot will generate its own header)
       ci_plot(
         pivotName = field_name,
         field_boundaries = AllPivots0,
         current_ci = CI,
         ci_minus_1 = CI_m1,
         ci_minus_2 = CI_m2,
-        last_week_diff = last_week_dif_raster_abs,        three_week_diff = three_week_dif_raster_abs,
+        last_week_diff = last_week_dif_raster_abs,
+        three_week_diff = three_week_dif_raster_abs,
         harvesting_data = harvesting_data,
         week = week,
         week_minus_1 = week_minus_1,
@@ -529,7 +535,7 @@ tryCatch({
         borders = borders
       )
       
-      # cat("\n")
+      cat("\n\n")
       
       # Call cum_ci_plot with explicit parameters
       cum_ci_plot(
@@ -539,15 +545,18 @@ tryCatch({
         facet_on = FALSE
       )
       
+      cat("\n\n")
+      
     }, error = function(e) {
       safe_log(paste("Error generating plots for field", field_name, ":", e$message), "ERROR")
-      cat(paste("## Error generating plots for field", field_name, "\n"))
+      cat("\\newpage\n\n")
-      cat(paste(e$message, "\n"))
+      cat("# Error generating plots for field ", field_name, "\n\n")
+      cat(e$message, "\n\n")
     })
-  })
+  }
 }, error = function(e) {
   safe_log(paste("Error in field visualization section:", e$message), "ERROR")
-  cat("Error generating field plots. See log for details.\n")
+  cat("Error generating field plots. See log for details.\n\n")
 })
 ```
 

r_app/report_utils.R

@@ -271,13 +271,13 @@ ci_plot <- function(pivotName,
                         nrow = 1, widths = c(0.23, 0.18, 0.18, 0.18, 0.23))
     
     # Output heading and map to R Markdown
-    cat(paste("## Field", pivotName, "-", age, "weeks after planting/harvest", "\n"))
+    cat(paste("## Field", pivotName, "-", age, "weeks after planting/harvest", "\n\n"))
     print(tst)
     
   }, error = function(e) {
     safe_log(paste("Error creating CI plot for pivot", pivotName, ":", e$message), "ERROR")
-    cat(paste("## Field", pivotName, "- Error creating visualization", "\n"))
+    cat(paste("# Field", pivotName, "- Error creating visualization", "\n\n"))
-    cat(paste("Error:", e$message, "\n"))
+    cat(paste("Error:", e$message, "\n\n"))
   })
 }
 
@@ -388,7 +388,7 @@ cum_ci_plot <- function(pivotName, ci_quadrant_data = CI_quadrant, plot_type = "
     }
     
     # Output plot to R Markdown with reduced height
-    subchunkify(g, 3.2, 10)  # Reduced from 3.2 to 2.8
+    subchunkify(g, 2.8, 10)  # Reduced from 3.2 to 2.8
     
   }, error = function(e) {
     safe_log(paste("Error creating CI trend plot for pivot", pivotName, ":", e$message), "ERROR")