- Update trend categorization thresholds in KPI calculations for clarity.
- Improve comments for better understanding of trend interpretations.
- Refactor report generation to use consistent terminology for trends.
- Add batch pipeline runner for weekly reporting across multiple dates.
- Minor formatting adjustments across various scripts for consistency.
- Consolidate 80_kpi_utils.R, 80_weekly_stats_utils.R, 80_report_building_utils.R into three client-aware files:
- 80_utils_common.R (50+ functions): Shared utilities, constants, and helpers
- 80_utils_agronomic_support.R: AURA-specific KPI calculations (6 KPIs)
- 80_utils_cane_supply.R: ANGATA placeholder for future expansion
- Move all internal helpers (calculate_cv, calculate_change_percentages, calculate_spatial_autocorrelation, extract_ci_values, etc.) to common
- Add MORAN_THRESHOLD_* constants to common
- Fix parameters_project.R field boundaries path (removed extra 'Data' directory)
- Update 80_calculate_kpis.R with conditional client-type sourcing logic
- Validate both ANGATA (cane_supply) and AURA (agronomic_support) workflows with comprehensive testing
- All 96+ functions accounted for; ready for production use
- Changed gap calculation from Q25 to 2σ below median method (kpi_utils.R)
- Integrated gap filling into script 80 with tile-based processing
- Added Gap_score column to field analysis output (Excel/CSV/RDS)
- Fixed memory issues by processing 25 tiles individually instead of merging
- Fixed Field_id matching to ensure gap scores populate correctly
Gap scores now calculate for all 1185 fields with range 0-11.25%
Works with tile-based mosaics (Angata 5x5 grid) without memory errors
- Script 80: Add fallback logic to detect and handle single-file mosaics
- Weekly stats utils: Support both tile-based and single-file mosaic detection
- Pipeline runner: Auto-detect mosaic mode (tiled vs single-file)
- Flexible grid size detection for tile-based projects (5x5, 10x10, etc)
Fixes:
- Script 80 now checks weekly_tile_max/{grid_size} first, falls back to weekly_mosaic
- calculate_field_statistics handles both tile patterns and single-file patterns
- run_full_pipeline detects project mode automatically
- All verification checks are now flexible and don't assume fixed paths
Projects like 'aura' (small ROI < 10km) will use single-file approach automatically
Projects like 'angata' (large ROI >= 10km) will use tile-based approach automatically
- Updated `detect_mosaic_mode` function to check for grid-size subdirectories in addition to tile-named files.
- Added comprehensive tests for DOY reset logic in `test_doy_logic.py`.
- Implemented feature extraction tests in `test_feature_extraction.py`.
- Created tests for growing window method in `test_growing_window_only.py`.
- Developed a complete model inference test in `test_model_inference.py`.
- Added a debug script for testing two-step refinement logic in `test_script22_debug.py`.
Timon
