Commit graph

4 commits

Author SHA1 Message Date
Timon 9a55d2fcf8 Refactor full pipeline script to include intelligent checking of existing outputs and dynamic execution of scripts. Added new Python scripts for RGB validation and evaluation template creation. Enhanced error handling and logging throughout the pipeline. 2026-01-27 08:58:06 +01:00
Timon c11b10a73f working on visualisation, not working too well... 2026-01-18 11:25:31 +01:00
Timon 458b8247be Cleanup: Fix CI formula, reorganize shell scripts and test files
- Fixed CI calculation: changed from NDVI (NIR-Red)/(NIR+Red) to correct NIR/Green-1 formula in:
  * process_single_tile() function
  * create_ci_band() utility function
  * Updated create_mask_and_crop() documentation

- Renamed numbered shell scripts for clarity (matching R script numbering):
  * 01_run_planet_download -> 10_planet_download.sh
  * 02_run_ci_extraction -> 20_ci_extraction.sh
  * 03_run_growth_model -> 30_growth_model.sh
  * 04_run_mosaic_creation -> 40_mosaic_creation.sh
  * 09_run_calculate_kpis -> 80_calculate_kpis.sh
  * 10_run_kpi_report -> 90_kpi_report.sh

- Archived obsolete shell scripts to old_sh/:
  * build_mosaic.sh, build_report.sh, interpolate_growth_model.sh
  * 05_run_dashboard_report.sh, 06_run_crop_messaging.sh
  * 11_run_yield_prediction.sh/ps1
  * runcane.sh, runpython.sh, smartcane.sh, update_RDS.sh

- Deleted test/debug files and temporary outputs:
  * analyze_*.R, benchmark_gpu_vs_cpu.py, convert_angata_harvest.py
  * debug_mosaic.R, examine_kpi_results.R, generate_sar_report.R
  * inspect_8band_structure.R, inspect_tif_bands.R
  * old_working_utils.R, predict_harvest_operational.R
  * run_kpi_calculation.R, run_report.R, simple_sar_test.R
  * data_validation_tool/, harvest_ci_pattern_analysis.png, kpi_debug.out

- Enhanced harvest prediction: Added threshold tuning (0.40-0.45) and field type handling

- Enhanced mosaic creation: Improved tile detection and routing logic
2026-01-14 16:58:51 +01:00
Timon 5aa456fbf5 Rename: 01_ to 10_ for stage consistency 2026-01-14 11:12:11 +01:00
Renamed from r_app/01_create_master_grid_and_split_tiffs.R (Browse further)