Commit graph

13 commits

Author SHA1 Message Date
Timon 5c29c9b549 sc 114 library formatting and cleaning 2026-02-04 09:44:08 +01:00
Timon 85d2f11ed6 issue 113 done, added propper yaml to all files 2026-02-03 17:31:02 +01:00
Timon 8d560ff155 SC-112 Phase 2 Complete: Restructure Script 80 utilities by client type
- Consolidate 80_kpi_utils.R, 80_weekly_stats_utils.R, 80_report_building_utils.R into three client-aware files:
  - 80_utils_common.R (50+ functions): Shared utilities, constants, and helpers
  - 80_utils_agronomic_support.R: AURA-specific KPI calculations (6 KPIs)
  - 80_utils_cane_supply.R: ANGATA placeholder for future expansion
- Move all internal helpers (calculate_cv, calculate_change_percentages, calculate_spatial_autocorrelation, extract_ci_values, etc.) to common
- Add MORAN_THRESHOLD_* constants to common
- Fix parameters_project.R field boundaries path (removed extra 'Data' directory)
- Update 80_calculate_kpis.R with conditional client-type sourcing logic
- Validate both ANGATA (cane_supply) and AURA (agronomic_support) workflows with comprehensive testing
- All 96+ functions accounted for; ready for production use
2026-02-03 17:21:35 +01:00
Timon c313f87959 fixed issue 110 moving stuff to 00 common 2026-02-03 16:14:10 +01:00
Timon c4ef10f44f changing paths CS-109 2026-02-03 15:13:21 +01:00
Timon d1f352f21c updated sc-91 2026-01-29 17:26:03 +01:00
Timon 4445f72e6f works for angata and aura 2026-01-29 16:04:04 +01:00
Timon dd915f9b9e adjusting scripts to work for all projects 2026-01-29 09:04:46 +01:00
Timon c11b10a73f working on visualisation, not working too well... 2026-01-18 11:25:31 +01:00
Timon fabbf3214d Enhance harvest detection logic and testing framework
- Updated `detect_mosaic_mode` function to check for grid-size subdirectories in addition to tile-named files.
- Added comprehensive tests for DOY reset logic in `test_doy_logic.py`.
- Implemented feature extraction tests in `test_feature_extraction.py`.
- Created tests for growing window method in `test_growing_window_only.py`.
- Developed a complete model inference test in `test_model_inference.py`.
- Added a debug script for testing two-step refinement logic in `test_script22_debug.py`.
2026-01-15 14:30:54 +01:00
Timon 458b8247be Cleanup: Fix CI formula, reorganize shell scripts and test files
- Fixed CI calculation: changed from NDVI (NIR-Red)/(NIR+Red) to correct NIR/Green-1 formula in:
  * process_single_tile() function
  * create_ci_band() utility function
  * Updated create_mask_and_crop() documentation

- Renamed numbered shell scripts for clarity (matching R script numbering):
  * 01_run_planet_download -> 10_planet_download.sh
  * 02_run_ci_extraction -> 20_ci_extraction.sh
  * 03_run_growth_model -> 30_growth_model.sh
  * 04_run_mosaic_creation -> 40_mosaic_creation.sh
  * 09_run_calculate_kpis -> 80_calculate_kpis.sh
  * 10_run_kpi_report -> 90_kpi_report.sh

- Archived obsolete shell scripts to old_sh/:
  * build_mosaic.sh, build_report.sh, interpolate_growth_model.sh
  * 05_run_dashboard_report.sh, 06_run_crop_messaging.sh
  * 11_run_yield_prediction.sh/ps1
  * runcane.sh, runpython.sh, smartcane.sh, update_RDS.sh

- Deleted test/debug files and temporary outputs:
  * analyze_*.R, benchmark_gpu_vs_cpu.py, convert_angata_harvest.py
  * debug_mosaic.R, examine_kpi_results.R, generate_sar_report.R
  * inspect_8band_structure.R, inspect_tif_bands.R
  * old_working_utils.R, predict_harvest_operational.R
  * run_kpi_calculation.R, run_report.R, simple_sar_test.R
  * data_validation_tool/, harvest_ci_pattern_analysis.png, kpi_debug.out

- Enhanced harvest prediction: Added threshold tuning (0.40-0.45) and field type handling

- Enhanced mosaic creation: Improved tile detection and routing logic
2026-01-14 16:58:51 +01:00
Timon 62106eeb3b Update: source() calls to reference renamed util files (20_, 30_, 40_) 2026-01-14 11:24:27 +01:00
Timon 252b4049b3 Rename: align stage numbering with Bitbucket structure 2026-01-14 11:08:33 +01:00
Renamed from r_app/04_mosaic_creation.R (Browse further)