#!/bin/bash

weeks_ago="0"

# Parse command line arguments
for arg in "$@"; do
    case $arg in
        --weeks_ago=*)
            weeks_ago="${arg#*=}"
            ;;
        *)
            echo "Unknown option: $arg"
            exit 1
            ;;
    esac
done

# Check if required arguments are set
if [ -z "$weeks_ago" ]; then
    echo "Missing arguments. Use: build_mosiac.sh --weeks_ago=3"
    exit 1
fi

cd ../r_app
Rscript 2_CI_data_prep.R $weeks_ago