# SmartCane Repository Cleanup Script
# This script will delete unnecessary files and move experimental scripts
# Review this script before running: .\cleanup_repo.ps1

Write-Host "🧹 SmartCane Repository Cleanup" -ForegroundColor Cyan
Write-Host "================================" -ForegroundColor Cyan
Write-Host ""

$deletedCount = 0
$movedCount = 0
$errors = @()

# ============================================================================
# PART 1: DELETE FILES
# ============================================================================

Write-Host "📁 PART 1: Deleting files..." -ForegroundColor Yellow
Write-Host ""

# A) Test & Debug Scripts
$testFiles = @(
    "r_app/test_benchmarks.R",
    "r_app/test_harvest.R",
    "r_app/test_kpis_esa.R",
    "r_app/debug_kpis.R",
    "r_app/quick_layout_test.R",
    "r_app/run_minimal_test.R"
)

Write-Host "Deleting test and debug scripts..." -ForegroundColor Gray
foreach ($file in $testFiles) {
    if (Test-Path $file) {
        Remove-Item $file -Force
        Write-Host "  ✓ Deleted: $file" -ForegroundColor Green
        $deletedCount++
    } else {
        Write-Host "  ⚠ Not found: $file" -ForegroundColor DarkGray
    }
}

# B) Output Files (.Rout)
$routFiles = @(
    "r_app/02_ci_extraction.Rout",
    "r_app/03_interpolate_growth_model.Rout",
    "r_app/04_mosaic_creation.Rout"
)

Write-Host "`nDeleting .Rout files..." -ForegroundColor Gray
foreach ($file in $routFiles) {
    if (Test-Path $file) {
        Remove-Item $file -Force
        Write-Host "  ✓ Deleted: $file" -ForegroundColor Green
        $deletedCount++
    } else {
        Write-Host "  ⚠ Not found: $file" -ForegroundColor DarkGray
    }
}

# C) Temporary PDF Files
$pdfFiles = @(
    "Rplots.pdf",
    "r_app/Rplots.pdf"
)

Write-Host "`nDeleting temporary PDF files..." -ForegroundColor Gray
foreach ($file in $pdfFiles) {
    if (Test-Path $file) {
        Remove-Item $file -Force
        Write-Host "  ✓ Deleted: $file" -ForegroundColor Green
        $deletedCount++
    } else {
        Write-Host "  ⚠ Not found: $file" -ForegroundColor DarkGray
    }
}

# D) Old/Deprecated Scripts
$oldScripts = @(
    "r_app/ci_extraction.R",
    "r_app/interpolate_growth_model.R",
    "r_app/mosaic_creation.R",
    "r_app/installPackages.R",
    "r_app/packages.R",
    "generated_package_config.R"
)

Write-Host "`nDeleting old/deprecated scripts..." -ForegroundColor Gray
foreach ($file in $oldScripts) {
    if (Test-Path $file) {
        Remove-Item $file -Force
        Write-Host "  ✓ Deleted: $file" -ForegroundColor Green
        $deletedCount++
    } else {
        Write-Host "  ⚠ Not found: $file" -ForegroundColor DarkGray
    }
}

# E) Generated Word Documents
$wordDocs = @(
    "r_app/CI_report.docx",
    "r_app/CI_report2.docx",
    "r_app/CI_report_age_filtered.docx",
    "r_app/CI_report_last_week.docx",
    "r_app/CI_report_week38_corrected.docx",
    "r_app/CI_report_with_kpis_aura.docx",
    "r_app/CI_report_with_kpis_esa.docx",
    "r_app/05_CI_report_dashboard_planet.docx",
    "r_app/10_CI_report_with_kpis_simple.docx",
    "r_app/script5_test.docx",
    "r_app/test_kpi_grid.docx",
    "r_app/output/aura/crop_analysis_AURA_w36vs35_20250916_1631.docx",
    "r_app/output/reports/CI_report_with_kpis_simple_test.docx",
    "r_app/output/CI_report_2x3_layout.docx",
    "r_app/output/CI_report_consolidated.docx",
    "r_app/output/CI_report_layout_test.docx",
    "r_app/output/test_clean.docx",
    "r_app/output/test_grid.docx",
    "r_app/output/test_kables.docx",
    "r_app/output/test_merged.docx"
)

Write-Host "`nDeleting generated Word documents (keeping word-styles-reference-var1.docx)..." -ForegroundColor Gray
foreach ($file in $wordDocs) {
    if (Test-Path $file) {
        Remove-Item $file -Force
        Write-Host "  ✓ Deleted: $file" -ForegroundColor Green
        $deletedCount++
    } else {
        Write-Host "  ⚠ Not found: $file" -ForegroundColor DarkGray
    }
}

# ============================================================================
# PART 2: MOVE FILES TO EXPERIMENTS
# ============================================================================

Write-Host "`n`n📁 PART 2: Moving files to experiments..." -ForegroundColor Yellow
Write-Host ""

# Create destination directories
$destDirs = @(
    "r_app/experiments/reports",
    "r_app/experiments/legacy_package_management"
)

foreach ($dir in $destDirs) {
    if (!(Test-Path $dir)) {
        New-Item -ItemType Directory -Path $dir -Force | Out-Null
        Write-Host "  Created directory: $dir" -ForegroundColor Cyan
    }
}

# Move experimental Rmd files
$rmdFiles = @(
    @{Source="r_app/CI_report_dashboard_planet.Rmd"; Dest="r_app/experiments/reports/"},
    @{Source="r_app/CI_report_dashboard_planet_enhanced.Rmd"; Dest="r_app/experiments/reports/"},
    @{Source="r_app/CI_report_executive_summary.Rmd"; Dest="r_app/experiments/reports/"},
    @{Source="r_app/simple_kpi_report.Rmd"; Dest="r_app/experiments/reports/"},
    @{Source="r_app/test_kpi_grid.Rmd"; Dest="r_app/experiments/reports/"},
    @{Source="r_app/test_minimal.Rmd"; Dest="r_app/experiments/reports/"}
)

Write-Host "Moving experimental Rmd files..." -ForegroundColor Gray
foreach ($file in $rmdFiles) {
    if (Test-Path $file.Source) {
        Move-Item $file.Source $file.Dest -Force
        Write-Host "  ✓ Moved: $($file.Source) → $($file.Dest)" -ForegroundColor Green
        $movedCount++
    } else {
        Write-Host "  ⚠ Not found: $($file.Source)" -ForegroundColor DarkGray
    }
}

# Move legacy package management scripts
$legacyFiles = @(
    @{Source="r_app/extract_current_versions.R"; Dest="r_app/experiments/legacy_package_management/"},
    @{Source="r_app/package_manager.R"; Dest="r_app/experiments/legacy_package_management/"}
)

Write-Host "`nMoving legacy package management scripts..." -ForegroundColor Gray
foreach ($file in $legacyFiles) {
    if (Test-Path $file.Source) {
        Move-Item $file.Source $file.Dest -Force
        Write-Host "  ✓ Moved: $($file.Source) → $($file.Dest)" -ForegroundColor Green
        $movedCount++
    } else {
        Write-Host "  ⚠ Not found: $($file.Source)" -ForegroundColor DarkGray
    }
}

# ============================================================================
# SUMMARY
# ============================================================================

Write-Host "`n`n📊 CLEANUP SUMMARY" -ForegroundColor Cyan
Write-Host "==================" -ForegroundColor Cyan
Write-Host "Files deleted: $deletedCount" -ForegroundColor Green
Write-Host "Files moved: $movedCount" -ForegroundColor Green

if ($errors.Count -gt 0) {
    Write-Host "`n⚠️ Errors encountered: $($errors.Count)" -ForegroundColor Red
    foreach ($err in $errors) {
        Write-Host "  $err" -ForegroundColor Red
    }
}

Write-Host "`n✅ Cleanup completed!" -ForegroundColor Green
Write-Host "`nNext step: Update .gitignore (see instructions)" -ForegroundColor Yellow