75 lines
2.6 KiB
R
75 lines
2.6 KiB
R
library(here)
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library('readxl')
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#chemba
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laravel_storage_dir <- here("laravel_app/storage/app", project_dir)
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reports_dir <- here(laravel_storage_dir, "reports")
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log_dir <- here(laravel_storage_dir, "logs")
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planet_tif_folder <- here(laravel_storage_dir, "merged_tif")
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merged_final <- here(laravel_storage_dir, "merged_final_tif")
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planet_tif_folder <- here(laravel_storage_dir, "merged_tif")
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merged_final <- here(laravel_storage_dir, "merged_final_tif")
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data_dir <- here(laravel_storage_dir, "Data")
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extracted_CI_dir <- here(data_dir, "extracted_ci")
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daily_CI_vals_dir <- here(extracted_CI_dir, "daily_vals")
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cumulative_CI_vals_dir <- here(extracted_CI_dir, "cumulative_vals")
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weekly_CI_mosaic <- here(laravel_storage_dir, "weekly_mosaic")
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daily_vrt <- here(data_dir, "vrt")
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harvest_dir <- here(data_dir, "HarvestData")
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dir.create(here(laravel_storage_dir), showWarnings = FALSE)
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dir.create(here(reports_dir), showWarnings = FALSE)
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dir.create(here(data_dir), showWarnings = FALSE)
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dir.create(here(log_dir), showWarnings = FALSE)
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dir.create(here(extracted_CI_dir), showWarnings = FALSE)
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dir.create(here(daily_CI_vals_dir), showWarnings = FALSE)
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dir.create(here(cumulative_CI_vals_dir), showWarnings = FALSE)
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dir.create(here(weekly_CI_mosaic),showWarnings = FALSE)
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dir.create(here(daily_vrt), showWarnings = FALSE)
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dir.create(merged_final,showWarnings = FALSE)
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dir.create(harvest_dir,showWarnings = FALSE)
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field_boundaries_sf <- st_read(here(data_dir, "pivot.geojson"))
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names(field_boundaries_sf) <- c("field", "sub_field", "geometry")
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field_boundaries <- field_boundaries_sf %>% terra::vect()
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harvesting_data <- read_excel(here(data_dir, "harvest.xlsx")) %>%
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dplyr::select(
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c(
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"field",
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"sub_field",
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"year",
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"season_start",
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"season_end",
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"age",
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"sub_area",
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"tonnage_ha"
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)
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) %>%
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mutate(
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field = as.character(field),
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sub_field = as.character(sub_field),
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year = as.numeric(year),
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season_start = as.Date(season_start),
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season_end = as.Date(season_end),
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age = as.numeric(age),
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sub_area = as.character(sub_area),
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tonnage_ha = as.numeric(tonnage_ha)
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) %>%
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mutate(
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season_end = case_when(season_end > Sys.Date() ~ Sys.Date(),
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TRUE ~ season_end),
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age = round(as.numeric(season_end - season_start) / 7, 0)
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)
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log_file <- here(log_dir, paste0(format(Sys.Date(), "%Y%m%d"), ".log"))
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# Create a logging function
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log_message <- function(message) {
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cat(message, "\n", file = log_file, append = TRUE)
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}
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log_head <- function(list) {
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log_message(paste(capture.output(str(head(AllPivots0))), collapse = "\n"))
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} |