Timon
6efcc8cfec
- Updated all CI maps to use tm_scale_continuous() for proper tmap v4 compatibility - Added fixed color scale limits (1-8 for CI, -3 to +3 for differences) for consistent field comparison - Fixed YAML header formatting issues in CI_report_dashboard_planet.Rmd - Positioned RGB map before CI overview map as requested - Removed all obsolete use_breaks parameter references - Enhanced error handling and logging throughout the pipeline - Added new experimental analysis scripts and improvements to mosaic creation
55 lines
1.3 KiB
R
55 lines
1.3 KiB
R
library(sf)
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library(terra)
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library(tidyverse)
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library(lubridate)
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library(exactextractr)
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library(readxl)
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# Vang alle command line argumenten op
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args <- commandArgs(trailingOnly = TRUE)
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# Controleer of er ten minste één argument is doorgegeven
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if (length(args) == 0) {
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stop("Geen argumenten doorgegeven aan het script")
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}
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# Converteer het eerste argument naar een numerieke waarde
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end_date <- as.Date(args[1])
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if (is.na(end_date)) {
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end_date <- lubridate::dmy("28-08-2024")
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}
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offset <- as.numeric(args[2])
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# Controleer of weeks_ago een geldig getal is
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if (is.na(offset)) {
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# stop("Het argument is geen geldig getal")
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offset <- 7
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}
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week <- week(end_date)
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# Converteer het tweede argument naar een string waarde
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project_dir <- as.character(args[3])
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# Controleer of data_dir een geldige waarde is
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if (!is.character(project_dir)) {
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project_dir <- "chemba"
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}
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new_project_question = FALSE
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source("parameters_project.R")
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source("ci_extraction_utils.R")
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raster_files <- list.files(merged_final,full.names = T, pattern = ".tif")
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# Load all raster files
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rasters <- lapply(raster_files, function(file) {
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r <- rast(file)
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r[[which(names(r) == "CI")]] # Select the CI band
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})
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# Calculate the maximum CI per pixel
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max_ci_raster <- do.call(terra::app, c(rasters, fun = mean, na.rm = TRUE))
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plot(max_ci_raster)
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