34 lines
684 B
Bash
Executable file
34 lines
684 B
Bash
Executable file
#!/bin/bash
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weeks_ago="0"
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data_dir="chemba"
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# Parse command line arguments
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for arg in "$@"; do
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case $arg in
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--weeks_ago=*)
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weeks_ago="${arg#*=}"
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;;
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--data_dir=*)
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data_dir="${arg#*=}"
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;;
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*)
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echo "Unknown option: $arg"
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exit 1
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;;
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esac
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shift
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done
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echo "Weeks ago: $weeks_ago"
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# Check if required arguments are set
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if [ -z "$weeks_ago" ] || [ -z "$data_dir" ]; then
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echo "Missing arguments. Use: build_mosiac.sh --weeks_ago=3 --data_dir=chemba"
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exit 1
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fi
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echo 2_CI_data_prep.R $weeks_ago $data_dir
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cd ../r_app
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Rscript 2_CI_data_prep.R $weeks_ago $data_dir |