Timon
458b8247be
- Fixed CI calculation: changed from NDVI (NIR-Red)/(NIR+Red) to correct NIR/Green-1 formula in: * process_single_tile() function * create_ci_band() utility function * Updated create_mask_and_crop() documentation - Renamed numbered shell scripts for clarity (matching R script numbering): * 01_run_planet_download -> 10_planet_download.sh * 02_run_ci_extraction -> 20_ci_extraction.sh * 03_run_growth_model -> 30_growth_model.sh * 04_run_mosaic_creation -> 40_mosaic_creation.sh * 09_run_calculate_kpis -> 80_calculate_kpis.sh * 10_run_kpi_report -> 90_kpi_report.sh - Archived obsolete shell scripts to old_sh/: * build_mosaic.sh, build_report.sh, interpolate_growth_model.sh * 05_run_dashboard_report.sh, 06_run_crop_messaging.sh * 11_run_yield_prediction.sh/ps1 * runcane.sh, runpython.sh, smartcane.sh, update_RDS.sh - Deleted test/debug files and temporary outputs: * analyze_*.R, benchmark_gpu_vs_cpu.py, convert_angata_harvest.py * debug_mosaic.R, examine_kpi_results.R, generate_sar_report.R * inspect_8band_structure.R, inspect_tif_bands.R * old_working_utils.R, predict_harvest_operational.R * run_kpi_calculation.R, run_report.R, simple_sar_test.R * data_validation_tool/, harvest_ci_pattern_analysis.png, kpi_debug.out - Enhanced harvest prediction: Added threshold tuning (0.40-0.45) and field type handling - Enhanced mosaic creation: Improved tile detection and routing logic
60 lines
2 KiB
Bash
Executable file
60 lines
2 KiB
Bash
Executable file
#!/bin/bash
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# Definieer de directories die aangemaakt moeten worden
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declare -a dirs=(
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"./laravel_app/storage/app/extracted_ci/cumulative_vals"
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"./laravel_app/storage/app/chemba/merged_tif"
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"./laravel_app/storage/app/chemba/merged_virtual"
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"./laravel_app/storage/app/chemba/single_images"
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)
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#
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## Loop door de directories en maak ze aan als ze nog niet bestaan,
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## of maak ze leeg als ze al bestaan
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for dir in "${dirs[@]}"; do
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if [ ! file -d "$dir" ]; then
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mkdir -p "$dir"
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chmod -R 775 "$dir"
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echo "Directory $dir is aangemaakt en bijgewerkt."
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else
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# Verwijder alle inhoud binnen de bestaande directory
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# find "$dir" -mindepth 1 -delete
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#echo "Inhoud van directory $dir is verwijderd."
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echo "Directory $dir bestaat al."
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fi
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done
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## Runnen van Jupyter Notebook
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# Directory waar de virtuele omgeving zal worden aangemaakt
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VENV_DIR="./python_app/myenv"
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# Controleer of de virtuele omgeving al bestaat
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if [ ! -d "$VENV_DIR" ]; then
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echo "Virtuele omgeving bestaat niet. Aan het aanmaken..."
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python3.9 -m venv "$VENV_DIR"
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else
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echo "Virtuele omgeving bestaat al."
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fi
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# Activeer de virtuele omgeving
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source "$VENV_DIR/bin/activate"
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# Installeer of update de benodigde pakketten
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OS=$(uname | tr '[:upper:]' '[:lower:]') # Dit zet de uitvoer om naar lowercase
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REQUIREMENTS_PATH="python_app/requirements_${OS}.txt"
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if [[ ! -f $REQUIREMENTS_PATH ]]; then
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echo "Requirements bestand niet gevonden voor besturingssysteem: $OS"
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exit 1
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fi
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pip install --upgrade -r $REQUIREMENTS_PATH
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# Hier kan je verdere stappen toevoegen, zoals het uitvoeren van je Python-script of Jupyter Notebook
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# Deactiveer de virtuele omgeving (optioneel)
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deactivate
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## Runnen van R scripts
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# Kopieer de excel file met harvesting data en maak directory aan indien nodig
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mkdir -p laravel_app/storage/app/harvesting_data
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cp "Current - Pivots planting date and harevsting data.xlsx" "laravel_app/storage/app/harvesting_data/"
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cp "pivot_20210625.geojson" "laravel_app/storage/app/Data"
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