36 lines
876 B
Bash
36 lines
876 B
Bash
#!/bin/bash
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# Run mosaic_creation.R
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# Usage: ./04_run_mosaic_creation.sh --end_date=<YYYY-MM-DD> --offset=<days> --data_dir=kibos --file_name_tif=<filename>
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end_date="$(date +%Y-%m-%d)"
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offset=7
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data_dir="kibos"
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file_name_tif="week_03_2024.tif"
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for arg in "$@"; do
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case $arg in
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--offset=*)
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offset="${arg#*=}"
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;;
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--end_date=*)
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end_date="${arg#*=}"
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;;
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--data_dir=*)
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data_dir="${arg#*=}"
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;;
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--file_name_tif=*)
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file_name_tif="${arg#*=}"
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;;
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*)
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echo "Unknown option: $arg"
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exit 1
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;;
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esac
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shift
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done
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echo "Running mosaic_creation.R for $data_dir with end_date $end_date, offset $offset, file $file_name_tif."
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cd r_app
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Rscript 04_mosaic_creation.R $end_date $offset $data_dir $file_name_tif
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cd ..
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